PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026719.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 342aa MW: 37971.1 Da PI: 4.9106 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.3e-19 | 122 | 172 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+f+taeeAa +++a+ +l+g Pbr026719.1 122 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFDTAEEAAVVYDNAAIQLRG 172 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.68E-31 | 122 | 180 | No hit | No description |
SMART | SM00380 | 3.6E-37 | 123 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-21 | 123 | 180 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-11 | 123 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.578 | 123 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-30 | 123 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MNHPAVKYTQ HRSHTKMVAN SAETAEFVLV RPRVVRITVT DGNATDSSSD DEAEESSFPG 60 ARHRVKRFVN EITIESCSNR DTDSAVWRSR TTRTGRKRPA GKSRAQARGR RDLKAIAAPA 120 GKKFRGVRQR PWGKWAAEIR DPLRRVRLWL GTFDTAEEAA VVYDNAAIQL RGPDALTNFA 180 PPAAISLPDV KPEVSSGFYS GDESHKHLCS PTSVLRCPSP SKEEGESPCP KQVPEATEAR 240 NVREDSCVSE SLSEFSDYTS FETFIPDDMF NFETSIPDFF EETSLGDDVG ILKEEMTDFG 300 NLGEMFVDSV WDFGFGSSPW CTDDYFKDIG DFFSSDPLVA L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 121 | 179 | 3 | 62 | ATERF1 |
3gcc_A | 4e-20 | 121 | 179 | 3 | 62 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026719.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336252.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A498JPC1 | 0.0 | A0A498JPC1_MALDO; Uncharacterized protein | ||||
STRING | XP_009336252.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-62 | cytokinin response factor 2 |