PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026623.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ZF-HD
Protein Properties Length: 372aa    MW: 40557.4 Da    PI: 8.0457
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026623.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-31132189260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+eve e
  Pbr026623.1 132 NGVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALSCSACNCHRNFHRKEVEGE 189
                  579**************************9.999*********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.9E-29134186IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-25134189IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.1E-31135186IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.084136185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.64E-18288357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-29293358IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-27298354IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MMDHLSSQEG EIPITIPSPI PILINTSFGS GGHGHLIHHH HQQPPHDPTS AAARAPVPQN  60
NNKHSNFLPS SAVVPQNQIP SNTNGSIPMP TSLDHSHEEE VVEEVEHHVN NANANVVPYK  120
YSTFNNKKVG HNGVRYKECL KNHAAAMGGT ATDGCGEFMP SGEEGTIEAL SCSACNCHRN  180
FHRKEVEGEQ QQLSSWDHNF HHTINRAVGI GSRKFLLNHG GGGGGGGGHH KSLLAPPQYP  240
HQPQMLMPNY NMGMGMLGML GSIPSDQSDE PEDHHHLHHG GGGGGAVGSR SPVGQVAKKR  300
FRTKFTQEQK EKMLNFAEKV GWKIQKQEDS FVQNFCQEIG VKRRVLKVWM HNNKHNLANK  360
IKPPPPSPPA P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232993561875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4929609e-50FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355386.10.0PREDICTED: zinc-finger homeodomain protein 3
SwissprotO647221e-67ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A498JEN20.0A0A498JEN2_MALDO; Uncharacterized protein
STRINGXP_009355386.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.17e-66homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]