PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 372aa MW: 40557.4 Da PI: 8.0457 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.6 | 1.1e-31 | 132 | 189 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrYkeClkNhAa++Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+eve e Pbr026623.1 132 NGVRYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALSCSACNCHRNFHRKEVEGE 189 579**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.9E-29 | 134 | 186 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-25 | 134 | 189 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.1E-31 | 135 | 186 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.084 | 136 | 185 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.64E-18 | 288 | 357 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-29 | 293 | 358 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-27 | 298 | 354 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MMDHLSSQEG EIPITIPSPI PILINTSFGS GGHGHLIHHH HQQPPHDPTS AAARAPVPQN 60 NNKHSNFLPS SAVVPQNQIP SNTNGSIPMP TSLDHSHEEE VVEEVEHHVN NANANVVPYK 120 YSTFNNKKVG HNGVRYKECL KNHAAAMGGT ATDGCGEFMP SGEEGTIEAL SCSACNCHRN 180 FHRKEVEGEQ QQLSSWDHNF HHTINRAVGI GSRKFLLNHG GGGGGGGGHH KSLLAPPQYP 240 HQPQMLMPNY NMGMGMLGML GSIPSDQSDE PEDHHHLHHG GGGGGAVGSR SPVGQVAKKR 300 FRTKFTQEQK EKMLNFAEKV GWKIQKQEDS FVQNFCQEIG VKRRVLKVWM HNNKHNLANK 360 IKPPPPSPPA P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-23 | 299 | 356 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026623.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ492960 | 9e-50 | FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009355386.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 3 | ||||
Swissprot | O64722 | 1e-67 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A498JEN2 | 0.0 | A0A498JEN2_MALDO; Uncharacterized protein | ||||
STRING | XP_009355386.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 7e-66 | homeobox protein 21 |
Publications ? help Back to Top | |||
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