PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026562.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 602aa MW: 62816.6 Da PI: 8.2052 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.6 | 6.1e-40 | 195 | 330 | 3 | 114 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ai++ tgt++++a+++ + s +ss+s+ s++ Pbr026562.3 195 VAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEHAIIATTGTGTIPANFStLNISLRSSGSTLSAPpskssphsfpg 292 689*****************************************************************999877888888885555566666788888 PP TCP 89 ......................kaaksaakskksqksaasalnlakes 114 + +q++++++++ +++ Pbr026562.3 293 alalahhphydegfahsgllgfH----------QQHQQQQHQQHHHQP 330 88888888888766544443331..........222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-39 | 199 | 332 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.342 | 200 | 254 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MDLSNFQPNN NKKQQQQQTN NTSTSTSNNN NTSLQHHHLL PHLQQKFQHH HSSSSSSSSS 60 SSSHFVGPFD GIRSSSGGGG GGGGPPFVGS ISIQAGLTTT SHSTPPPPPT SVPSSSSFSS 120 SSSTSSPSST STSTAPPPHL VDASLAIATR SDPHPPTRPA SLLDSAKNNQ TQQQLTISPA 180 TTTAPSAPAA PATQVAKRST KDRHTKVEGR GRRIRMPATC AARVFQLTRE LGHKSDGETI 240 EWLLQQAEHA IIATTGTGTI PANFSTLNIS LRSSGSTLSA PPSKSSPHSF PGALALAHHP 300 HYDEGFAHSG LLGFHQQHQQ QQHQQHHHQP HQSPLITADQ IAEALPSGGG DSAGGGGGES 360 TENYMRKRFR EDLFKDDNQG QGESGSGDGG GSPSRNKAFK GASSSGLQLP KQQQQGAEVG 420 SSGVLRPSNI LPATAMWAVA PAPTSGAGNT FWMLPVTAGP GVPSMATATF GAGPSEAAQM 480 WTFPSSTSSH GSTLQAPMHF MPRFNLPGSL EFQPAAAGGR ANPLQLGSML MQQPPSQHLG 540 LGVSESNLGM LAALNAYSRG GLNMNSDQHQ QNHHHPLDHH QQQQHQPQTT DSGDEAPNSS 600 Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026562.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028963233.1 | 0.0 | transcription factor TCP8 | ||||
TrEMBL | A0A498J986 | 0.0 | A0A498J986_MALDO; Uncharacterized protein | ||||
STRING | XP_009355280.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-70 | TCP family protein |