PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr026554.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 381aa MW: 42926.4 Da PI: 8.0291

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr026554.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.4	6.2e-08	244	288	17	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l + Pbr026554.1 244 AQRSRVRKLQYIAELERNVQALQAEGTEVSAELEFLNQQNMILSM 288 89********************************99998766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.8E-4	233	292	IPR004827	Basic-leucine zipper domain
CDD	cd14703	8.75E-16	236	284	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.3E-5	244	287	No hit	No description
SuperFamily	SSF57959	6.19E-6	244	286	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MANSKGSSNI RNFMYSGKHP LLPPKSPFPS VPPSYADYVL SPAIGSKTVQ KPREGNAHHQ 60 RTSSESLLIE EQPSWLDDLL NEPDTPVRRG GHRRSSSDSF AYVDAINASN LDYATQDEYK 120 YHNMISAPSW GSQDLDPRKD LRHASLYTEL NLVKQKNKAW ESSLNSVNNL NGLPSVRDNI 180 VLQSSGSLST PQEADGIAST ASERHDHVDS GFHDPKSSSE RKDNSNAKPY ASETDAKRAK 240 QQFAQRSRVR KLQYIAELER NVQALQAEGT EVSAELEFLN QQNMILSMEN KALKQRLENI 300 GQEQLIKYLE QELLEREIGR LRVLYEQQQQ QHQQQQQQQR PSSSHRRSNS RDLDSQFANL 360 SLKHKDANAG RDPVTGALRI *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MANSKGSSNI RNFMYSGKHP LLPPKSPFPS VPPSYADYVL SPAIGSKTVQ KPREGNAHHQ  60
RTSSESLLIE EQPSWLDDLL NEPDTPVRRG GHRRSSSDSF AYVDAINASN LDYATQDEYK  120
YHNMISAPSW GSQDLDPRKD LRHASLYTEL NLVKQKNKAW ESSLNSVNNL NGLPSVRDNI  180
VLQSSGSLST PQEADGIAST ASERHDHVDS GFHDPKSSSE RKDNSNAKPY ASETDAKRAK  240
QQFAQRSRVR KLQYIAELER NVQALQAEGT EVSAELEFLN QQNMILSMEN KALKQRLENI  300
GQEQLIKYLE QELLEREIGR LRVLYEQQQQ QHQQQQQQQR PSSSHRRSNS RDLDSQFANL  360
SLKHKDANAG RDPVTGALRI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr026554.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009355276.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	4e-70	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A314Y9N1	0.0	A0A314Y9N1_PRUYE; Uncharacterized protein
STRING	XP_009355276.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5123	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-101	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]