PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 717aa MW: 76555.1 Da PI: 6.5539 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50 | 5.4e-16 | 460 | 506 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Pbr026078.1 460 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 506 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.72E-17 | 452 | 510 | No hit | No description |
SuperFamily | SSF47459 | 8.64E-21 | 453 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.216 | 456 | 505 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-13 | 460 | 506 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.2E-20 | 460 | 514 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-17 | 462 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MPLSELYRMA GRVDSSQDFE NDFLELVWEN GQVMMQGQSS RTRKNPSFNS LPSFSNPKNR 60 DRDVGNGNIG KTGKFGSVVD SGLDEIPLSV PSSEMGLSED DDMLPWLNYS IDEPLHHEYC 120 HDFLPEFSSA TANEASTNHN LASIDKRSSS SQVFRDSNSN SAHEGACLQQ RNVGKVPLNG 180 GADVSRPRSG ATQLYSLSSQ RSQASFPSFR SRVSDTAGDN TSSATHRGVG KNSTHISSAG 240 GSPGMKIPRP DPVTPSNNNP SIVNFSHFSR PAALAKANVQ TNGVMAGSGS SSMIRIANKD 300 KFSSATSNSL PESMLIDSSS SAPKESNSQC QQILVRSSVE LKPTEAKHLE EPCTAKRSEG 360 TCQEETSKND INSNHIPCES AVRVSPNGEK TVEPVVASSV CSGNSVERGS DDPTQALKRK 420 FRETDESECH SDDVEEEYMG VKKGAHARGM GSKRSRAAEV HNLSERKRRD RINEKMRALQ 480 ELIPNCNKVD KASMLDEAIE YLKTLQLQLQ MMSMGAGMYM PPMMLPPGMQ HMHGPCMAHF 540 SPMGVGMGMG MGMGLGMGFG MGMPDMIGAS SSYPMLQVPP MQGAHFPGSH MAGHTAFNGM 600 MGSNLQMFGL PSQGVPVPMQ RAPLAPSSAG PFVKSSGGLN ASSSGGPVEN VESAPVSGSK 660 DSVQNMNSQA MQNSNANSSM NQTSSQGQAT NEGFAQSALV RNNVQATDVN NNRADG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 464 | 469 | ERKRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026078.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN987874 | 0.0 | JN987874.1 Malus x domestica phytochrome-interacting factor 3 (PIF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335548.1 | 0.0 | PREDICTED: transcription factor PIF3-like isoform X1 | ||||
Refseq | XP_009365453.1 | 0.0 | PREDICTED: transcription factor PIF3-like isoform X1 | ||||
TrEMBL | A0A498IIU9 | 0.0 | A0A498IIU9_MALDO; Uncharacterized protein | ||||
STRING | XP_009335548.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009365453.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-54 | phytochrome interacting factor 3 |