PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025896.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 425aa    MW: 48787.9 Da    PI: 7.0296
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025896.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.54.1e-31110214199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Pbr025896.1 110 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNDKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGElGKDRL 207
                  89***************************9555568889************************************************66699999999 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Pbr025896.1 208 YIDWRRR 214
                  9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-42104224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-30106213IPR015300DNA-binding pseudobarrel domain
CDDcd100173.75E-25108197No hitNo description
PROSITE profilePS5086314.621110215IPR003340B3 DNA binding domain
PfamPF023621.5E-28110214IPR003340B3 DNA binding domain
SMARTSM010191.8E-23110215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDFMQRDQKG YSDKEDQDQE QEDQEEEEDI ITTSNSNSGS SPKYKGILLP PPPPHYHQQY  60
GQQKPWLDAQ NHSSPEAINF MDLSLNKDQV SDGSTDPNYW PPNSEREHMF DKVVTPSDVG  120
KLNRLVIPKQ HAERYFPLDS SSNDKGLLLN FQDRTGKPWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFERGVG ELGKDRLYID WRRRPPPPLP PQLHPHNHYG GGRLYSLLQR  240
PLPSSVMPSM PLRHHEHFLH SNNNVHHPYH HQHHNYQIMN QQYLPHQLHQ LQGGRDQHVI  300
HHQYPMVIDS VPFYQHGNYK NSATSTSSAS VASSAGKKLR LFGVNMECSS SPIEEDDHQE  360
CQILSSTAIP YQPHHHHLPS STSSLAFPPL EFIRLPNTSS SSTPPDHHFP SNKGKSTTSF  420
YLDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-661042152114B3 domain-containing transcription factor NGA1
5os9_B1e-661042152114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025896.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335263.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_009335264.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_009335265.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_009335266.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_009335268.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A498KPF40.0A0A498KPF4_MALDO; Uncharacterized protein
STRINGXP_009335263.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-62B3 family protein