PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025790.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 463aa    MW: 50699.9 Da    PI: 8.1412
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025790.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR30.86.1e-101792031640
          TCR  16 kYCeCfaagkkCseeCkCedCkNke 40 
                  +YCeCfaag++C e C+C++C+Nk 
  Pbr025790.1 179 LYCECFAAGVYCIEPCSCQECFNKP 203
                  7**********************96 PP
2TCR51.52.1e-16250288139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Pbr025790.1 250 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 288
                  589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.347165290IPR005172CRC domain
SMARTSM011144.1E-5171205IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-6179202IPR005172CRC domain
SMARTSM011144.4E-17250291IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.5E-12252288IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVSNQIEKED QFNCKPGLNL HRGLRRRCLD FEMAEARRKS LDNVPNSSSL LSQSDEKITT  60
NDKQLVPMKP GGESARCILP GIGLHLNALA TTSKDYKTIK RENMAYGRQL SLPNLSASAH  120
SPTAGQGLGH ESFSSASSER DMDGTENGVQ LLQDASQEPA FLANEEFNQN SPKKKRRVLY  180
CECFAAGVYC IEPCSCQECF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR TADPVPEYGE  240
ESSKTPASAR HKRGCNCKKS SCLKKYCECY QGGVGCSISC RCEGCKNAFG RKDGSFVGTE  300
TEADEEETEA CDKSVAENHQ QKNEIQKNEE QRQDSALPST PLRLSRQFSL PFSSKNKPPR  360
SSTFNIGSSS GLYTITIQKL GKPNILRPES KLEGHNQAVP EDEMPEILQG DGSPSTGIKT  420
ASPNGKRVSP PNNEFGPSPG RRAGRKLILQ SIPSFPSLTP QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1217928724120Protein lin-54 homolog
5fd3_B4e-1217928724120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172176KKKRR
2172177KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025790.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335289.10.0PREDICTED: LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
SwissprotF4JIF51e-117TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A498I9F60.0A0A498I9F6_MALDO; Uncharacterized protein
STRINGXP_009335289.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-116TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]