PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025755.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 24074.3 Da PI: 8.4063 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.3 | 1.2e-28 | 2 | 100 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA r+ +Pv+Ga+g++l+++++++q + e Pbr025755.1 2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLLFEAVGRTMNPVNGAMGLLLSGKWEVCQGAME 99 6********************************************************************************************98877 PP DUF260 94 l 94 Pbr025755.1 100 P 100 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.268 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-24 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR 60 PALFQSLLFE AVGRTMNPVN GAMGLLLSGK WEVCQGAMEP VLRGGAVEPL PEYSRDIHYV 120 REHQVREVQR QSTKRKRPNF DVNDNDDYVE NFRSPDLNLS LTSATGLMSR TKRRDCRAAT 180 PSVEHSETTT LGSSSPENNC TAGNLERTKL LRLFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025755.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335387.1 | 1e-161 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 4e-60 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A498JNH2 | 1e-151 | A0A498JNH2_MALDO; Uncharacterized protein | ||||
STRING | XP_009335387.1 | 1e-160 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-62 | LOB domain-containing protein 38 |