PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025381.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 733aa    MW: 79655.8 Da    PI: 6.463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025381.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07307327526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  Pbr025381.1 307 PCPDFRK-GACRRGDMCEYAHG 327
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.206.6E-1840181IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1745180IPR020683Ankyrin repeat-containing domain
CDDcd002043.01E-1586165No hitNo description
PROSITE profilePS5029716.46787180IPR020683Ankyrin repeat-containing domain
PfamPF127965.8E-1087156IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01487117IPR002110Ankyrin repeat
SMARTSM002481.3E-4122154IPR002110Ankyrin repeat
PROSITE profilePS5008811.007122157IPR002110Ankyrin repeat
SMARTSM003564.0E-6302328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582307329IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5307327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4307329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4335365IPR000571Zinc finger, CCCH-type
SMARTSM0035668337360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MCNGSERIKP NSSPAASLIS VDESRLSNTA MNHLTVETED AFASLLELAA NNDIQSFKRS  60
IEHDPSGIDE IGLWYCRQKG SKQMVNEQRS PLMVAATYGS IDVMKLILSL SDADVNQACG  120
RDRSTALHCA ASGGAENAVD CVKLLLGAGA DPNSVDANGH HPIDVIVVPP RLQNIKLALE  180
ELLMINGSAG EQTLTVSTRT VHSSSPPLSA SPENGSPSAF DFNCSPTKSK FYNSLSSASE  240
KKEYPVDPSL PDIKNSIYST DEFRMYSFKV RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
FHYSCVPCPD FRKGACRRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCA RRVCFFAHTT  360
EELRPLYVST GSAVPSPRSS TSGALAMDFA AAMSLLPGSP SSVNVMSPSP FTPPMSPSAN  420
GMSHSSLAWP QPNVPALHLP GSNFQSSRLR SSLCARDIMP SDDFDLLPEF DMQQQQLLNE  480
LSCLSQPSLS NNSLNRSGRR TTLTPSNLDD LFSAESLSPR YSEQSLQSGV FSPTHKSAVL  540
NQFQQQQSML SPIHTNFSPK AVDHALLQAS YGGPSSGRMS PRNVEPISPM GSRVSMLAQR  600
EKQQQFRSLS SRELGSNSAS IVGSSPNSWS KWGSSNGKPD WAVTTDELGK LRRSSSFELG  660
NNEEEPDLSW VQSLVKESPT EIKEKQTPSS GGTATGSSNE GSNANSQRES VDHAVLGAWI  720
DQMHLDLVAQ QN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2535630.0FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19.
GenBankFM2535640.0FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334960.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_018498201.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLD9ZIV50.0D9ZIV5_MALDO; C3HL domain class transcription factor
STRINGXP_009334960.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]