PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17994.6 Da PI: 6.1261 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 23 | 74 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdps ng +r +lg+f taeeAa+a+++a+ ++g+ Pbr025353.1 23 RYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 74 7********.**********98887..**********************988886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.5E-31 | 23 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-13 | 23 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-28 | 23 | 83 | No hit | No description |
PROSITE profile | PS51032 | 24.869 | 23 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-36 | 23 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-23 | 23 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MEGKRGPENN NQQREPKVRD QNRYRGIRRR PWGKFAAEIR DPSRNGARLW LGTFETAEEA 60 ARAYDRAAFG FRGHLAILNF PNDYQHHNPS SSLSTLSSSS SSASSSSLFP GVDPGRRINF 120 GRVQEEDEVI EFEYLDNNLL EDLLDTKEDN HTQGQPTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-28 | 20 | 139 | 11 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025353.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF968765 | 0.0 | HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354980.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 7e-44 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A498JSV0 | 2e-81 | A0A498JSV0_MALDO; Uncharacterized protein | ||||
STRING | XP_009354980.1 | 1e-113 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 6e-29 | ERF family protein |
Publications ? help Back to Top | |||
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