PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr025227.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HSF

Protein Properties

Length: 504aa MW: 56147.6 Da PI: 4.9085

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr025227.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.1	1.9e-35	20	111	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sws+ +nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll+++ Pbr025227.1 20 FLNKTYDMVDDHSTDAVVSWSNGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTVS 107 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Pbr025227.1 108 RRKP 111 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-38	13	104	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.85E-34	15	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	9.8E-60	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.1E-30	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MEGVEDAASV INSANTPPPF LNKTYDMVDD HSTDAVVSWS NGNNSFVVWN VPEFSRDLLP 60 KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKTVSRRK PAHVQSHQQP 120 PPQVQSSQVG PCVEVVNPGL EEEVERLKRD KNTLMQELVR LRQQQQATDN QLHNVGQRMQ 180 GMEQRQQQMM SFLAKAMHSP GFLSQLVQHQ NENNRRITGS NKKRRLPRQE DEILVGNLGS 240 KVLDGQMVKY QPSMNEAAKA MLRQILKMNT SPKLEPSLIN PDAFLIDNVP SNATDSRNTS 300 SRNLGVTLSE VPPISAECYM PEESRFPVSC HSTAISEIQS SPYAVANSVK ETQVLEENMH 360 NFQQDTAIPE LTQMQGIVSE SNVEIPNANF ISSETGNAGY MGMSAGLDGR LPTDIEPFSP 420 EPDSDALPDG ISSLPSINDI FWEQFLTASP LPGDTDEISL SSDDGVAVNQ DLQLGKENGW 480 EKSQHMNHIT EQMQLLASGS RTG*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MEGVEDAASV INSANTPPPF LNKTYDMVDD HSTDAVVSWS NGNNSFVVWN VPEFSRDLLP  60
KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKTVSRRK PAHVQSHQQP  120
PPQVQSSQVG PCVEVVNPGL EEEVERLKRD KNTLMQELVR LRQQQQATDN QLHNVGQRMQ  180
GMEQRQQQMM SFLAKAMHSP GFLSQLVQHQ NENNRRITGS NKKRRLPRQE DEILVGNLGS  240
KVLDGQMVKY QPSMNEAAKA MLRQILKMNT SPKLEPSLIN PDAFLIDNVP SNATDSRNTS  300
SRNLGVTLSE VPPISAECYM PEESRFPVSC HSTAISEIQS SPYAVANSVK ETQVLEENMH  360
NFQQDTAIPE LTQMQGIVSE SNVEIPNANF ISSETGNAGY MGMSAGLDGR LPTDIEPFSP  420
EPDSDALPDG ISSLPSINDI FWEQFLTASP LPGDTDEISL SSDDGVAVNQ DLQLGKENGW  480
EKSQHMNHIT EQMQLLASGS RTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-24	18	109	27	129	Heat shock factor protein 1
5d5v_B	4e-24	18	109	27	129	Heat shock factor protein 1
5d5v_D	4e-24	18	109	27	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr025227.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB853253	0.0	AB853253.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH235.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354812.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-164	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A498JRN8	0.0	A0A498JRN8_MALDO; Uncharacterized protein
STRING	XP_009354811.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1843	31	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-130	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]