PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025176.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 159aa    MW: 17162.3 Da    PI: 8.6322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025176.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-172170255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Pbr025176.1 21 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 70
                 69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-372184IPR001471AP2/ERF domain
PROSITE profilePS5103221.972178IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212179IPR016177DNA-binding domain
CDDcd000186.10E-262280No hitNo description
Gene3DG3DSA:3.30.730.109.5E-302279IPR001471AP2/ERF domain
PRINTSPR003671.9E-112233IPR001471AP2/ERF domain
PfamPF008475.0E-112270IPR001471AP2/ERF domain
PRINTSPR003671.9E-116080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEGGGGEAVN RKRAGVDNDK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPVAAARA  60
YDTAVFYLRG PSARLNFPEA LPVEGGCGCG DMSAALIRKR ATEVGARVDA VETALRHHRG  120
SAAGNGDGDE IKPCFAGCVD RVDLNKMPDP ENSEGEWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142078463ATERF1
3gcc_A1e-142078463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025176.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324691e-150GU732469.1 Malus x domestica AP2 domain class transcription factor (AP2D45) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367373.11e-113PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ9FH949e-59ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLD5L1296e-94D5L129_MALDO; AP2 domain class transcription factor
STRINGXP_009367373.11e-112(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.14e-61DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]