PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 373aa MW: 40804.7 Da PI: 6.0882 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.6 | 6.9e-16 | 140 | 186 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Pbr025166.1 140 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 186 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-20 | 133 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-20 | 133 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.86 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.60E-17 | 139 | 190 | No hit | No description |
Pfam | PF00010 | 2.4E-13 | 140 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MGDTYECDRY YKNATCSSSS PAAPPHSAAD DMSLLLQQIL VRSSSSLASG KAPQSLFSSS 60 PSVGALLPGN LDRPCHSGFL GDGIPAVDSF AAFVSGHPNG ASENEADEYD CESEEGLEAF 120 VEARRGGGRS SSKRSRAAEV HNLSEKRRRS RINEKMKALQ NLIPNSNKTD KASMLDEAIE 180 YLKQLQLQVQ MLSMRNGMSL HPLCLPGTLQ PVQLSQMRME LGEENRPLHL DMTGTLHMNQ 240 ESSTQNLFNL SNQCTAAKES YVPDMSNVVN SETSFGLEPS IQSHLGPFQL PASSQEICRD 300 NLLQHQKIDA KHSEMNLSAT VSLPFIAQVS ERKSIFDSCI IGRDGQGGGL LKSIEQNFHI 360 DKKKCLERYH QD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025166.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU181270 | 0.0 | GU181270.1 Prunus persica ALCATRAZ/SPATULA-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018505322.1 | 0.0 | PREDICTED: transcription factor SPATULA-like isoform X1 | ||||
Swissprot | Q9FUA4 | 2e-64 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | A0A498KI72 | 0.0 | A0A498KI72_MALDO; Uncharacterized protein | ||||
STRING | XP_009367270.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2276 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 3e-64 | bHLH family protein |