PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025153.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 278aa    MW: 31142.7 Da    PI: 10.3429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025153.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-06188228954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P         ++ a++L +A++Y+k L
  Pbr025153.1 188 ARHRRERISEKIRILQRLVPGG-----INMDTASMLDEAIHYVKFL 228
                  699*****************96.....36***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.999179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12180237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-9181233No hitNo description
SuperFamilySSF474593.4E-12183237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDVDMLKSLS SSSAVGGDHH HHHHMDMMTM MMQMQKQHHS PDHFCNDSYP NNNNPTFPEI  60
DFNWVSNPNP NNLESISPLP MFHDPNPNAV PQQRTLLNPA LPSSVSFMVN PIQKPLTLRL  120
IKPSGISPTG LSVPPSTSPY EKRNSMAAMR EMIFRIAAMQ PIQIDPEAVK PPKRRNVKIS  180
KDPQSVAARH RRERISEKIR ILQRLVPGGI NMDTASMLDE AIHYVKFLKK QVQTLERAGA  240
DRPDGVGFQG SGNQLGNVNY SSFRRPSQLV GSMQMLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025153.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367185.10.0PREDICTED: transcription factor HEC2-like
TrEMBLM5VUU41e-123M5VUU4_PRUPE; Uncharacterized protein
STRINGXP_009367185.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-46bHLH family protein