PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr025141.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 295aa MW: 32734.7 Da PI: 6.5701 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.9 | 2.5e-36 | 10 | 100 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y +++d++l+++isw+e+g++fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF++++F++g+kell++i+ Pbr025141.1 10 FLTKTYLLVDDPSLDDVISWNESGTTFVVWKTVDFARDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANENFQRGQKELLSEIR 97 9***************************************************************9999.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Pbr025141.1 98 RRK 100 *98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.9E-38 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.7E-60 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.05E-33 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.7E-32 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.0E-20 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MAQRSVPAPF LTKTYLLVDD PSLDDVISWN ESGTTFVVWK TVDFARDLLP KYFKHNNFSS 60 FVRQLNTYGF RKTVPDKWEF ANENFQRGQK ELLSEIRRRK PVTSTAAQAA LGEKSGGPST 120 PSNSGEELAS TSTSLPDSKN PGSVETTTLS QVADLSDENK KLKRENENLN SELAQTKKQC 180 DELVGFLVEY VKMGPEQINR IIRRGSYGPT RDDFEPDDRG LGLDMDGGDD DEEEKEGLKL 240 FGVWVKGDEK MKGKKTGRDE KFGVCGVGGV PRAKRMKGGV DFHASMMRSG KVCN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-26 | 5 | 99 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-26 | 5 | 99 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-26 | 5 | 99 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr025141.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR132194 | 0.0 | KR132194.1 Eriobotrya japonica heat shock factor 3 (HSF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009367059.1 | 0.0 | PREDICTED: heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 1e-100 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | D9ZJ30 | 0.0 | D9ZJ30_MALDO; HSF domain class transcription factor | ||||
STRING | XP_009367059.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7114 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36990.1 | 2e-82 | heat shock factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|