PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr025131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 473aa MW: 52610.9 Da PI: 8.2533 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.8 | 2.6e-20 | 113 | 203 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k l++s+v + ++ lp f+++h + +++t+tledesgr++++k+i +k++ l++GW++F+ +++L egD++vF+l++ ++f +v ++r Pbr025131.1 113 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQYQLKYIACKTG----LSAGWRQFAASHNLLEGDVLVFQLVEPTKF--KVYIIR 202 89************************644..678****************777776....***********************9876666..999888 PP S CS B3 99 k 99 + Pbr025131.1 203 S 203 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.71E-24 | 107 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-21 | 108 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-28 | 111 | 202 | No hit | No description |
SMART | SM01019 | 7.6E-24 | 113 | 204 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.775 | 113 | 204 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-17 | 113 | 203 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 473 aa Download sequence Send to blast |
MARKVDGKPQ TSPSKPRLRP KHAANPKPSS LTGKVKKPGK PNEKEVEHSM PMKELSNTQI 60 TKMLSHAGKS PAISNTQYEF PVDGSPSRGQ AKSSAVIRAQ EVRSKLDCQF PSFVKSLVRS 120 HVASCFWMGL PSLFCKSHLP DKDITMTLED ESGRQYQLKY IACKTGLSAG WRQFAASHNL 180 LEGDVLVFQL VEPTKFKVYI IRSNGIAEVD GALCLLNLDN NTKQKDSDKD NAETSTTPCN 240 DSIRKRAHSP QLVVPKKKKI GLQRAEQSEN DSEEAGSEVS EDLRSPAAAL QFEDIRSYEN 300 FHILVDGLFL DSEVPEDVRK KYYKLCRSQK AFLHENVIKG MNPNLIIGAI SETVNIADSI 360 KACKVTTSRD DFVSWDKYLT AFELLGMNVG FLHDRICRLA NLADDSGAAL EAKMYKEARI 420 ERSQAGIGIR NIEVKLEEMR EACDEFGAAI ESLRSKAEIN TLKFQEEVTA PW* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 243 | 258 | RKRAHSPQLVVPKKKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr025131.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366999.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A498KFP0 | 0.0 | A0A498KFP0_MALDO; Uncharacterized protein | ||||
STRING | XP_009366999.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-39 | B3 family protein |