PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 473aa    MW: 52610.9 Da    PI: 8.2533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025131.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.82.6e-20113203199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k l++s+v +  ++ lp  f+++h  +  +++t+tledesgr++++k+i +k++    l++GW++F+ +++L egD++vF+l++ ++f  +v ++r
  Pbr025131.1 113 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQYQLKYIACKTG----LSAGWRQFAASHNLLEGDVLVFQLVEPTKF--KVYIIR 202
                  89************************644..678****************777776....***********************9876666..999888 PP

                  S CS
           B3  99 k 99 
                  +
  Pbr025131.1 203 S 203
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-24107205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-21108204IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-28111202No hitNo description
SMARTSM010197.6E-24113204IPR003340B3 DNA binding domain
PROSITE profilePS5086313.775113204IPR003340B3 DNA binding domain
PfamPF023621.2E-17113203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MARKVDGKPQ TSPSKPRLRP KHAANPKPSS LTGKVKKPGK PNEKEVEHSM PMKELSNTQI  60
TKMLSHAGKS PAISNTQYEF PVDGSPSRGQ AKSSAVIRAQ EVRSKLDCQF PSFVKSLVRS  120
HVASCFWMGL PSLFCKSHLP DKDITMTLED ESGRQYQLKY IACKTGLSAG WRQFAASHNL  180
LEGDVLVFQL VEPTKFKVYI IRSNGIAEVD GALCLLNLDN NTKQKDSDKD NAETSTTPCN  240
DSIRKRAHSP QLVVPKKKKI GLQRAEQSEN DSEEAGSEVS EDLRSPAAAL QFEDIRSYEN  300
FHILVDGLFL DSEVPEDVRK KYYKLCRSQK AFLHENVIKG MNPNLIIGAI SETVNIADSI  360
KACKVTTSRD DFVSWDKYLT AFELLGMNVG FLHDRICRLA NLADDSGAAL EAKMYKEARI  420
ERSQAGIGIR NIEVKLEEMR EACDEFGAAI ESLRSKAEIN TLKFQEEVTA PW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243258RKRAHSPQLVVPKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009366999.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A498KFP00.0A0A498KFP0_MALDO; Uncharacterized protein
STRINGXP_009366999.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-39B3 family protein