PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr025072.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 351aa MW: 37161.1 Da PI: 8.8428

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr025072.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	64	122	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Pbr025072.1 64 TENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSV 122 67899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.6E-33	66	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	67	121	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-25	67	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MIQELFGGAG LNNIAGGGER KSFSFHGGTT SSPSLSPSPS PSCSTTTTGT GTATTTTTTG 60 LSNTENLRCP RCDSSNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKNK 120 SVTVSTASIG KTSAGKLKTV VSEIGRSGLG GGFDQEVQAS PILWGSPQNS HLLALLRSSH 180 QNPNPNPNQL CNSVNVKEEG GMNNMIGSHM MTTEPAAMST ARTMGLDPVC QAPSLGLCSS 240 FWRNNNNQNQ PPPSHHQQNG FIVGHEVQSS NIGIQELFQR LRSTTSQSGS YYSNHLNNVV 300 MSSSSSSLSS SSTSLILDSA PVVGGGEMSY WNPAFTAWSS DLPTTNGAYH *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MIQELFGGAG LNNIAGGGER KSFSFHGGTT SSPSLSPSPS PSCSTTTTGT GTATTTTTTG  60
LSNTENLRCP RCDSSNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKNK  120
SVTVSTASIG KTSAGKLKTV VSEIGRSGLG GGFDQEVQAS PILWGSPQNS HLLALLRSSH  180
QNPNPNPNQL CNSVNVKEEG GMNNMIGSHM MTTEPAAMST ARTMGLDPVC QAPSLGLCSS  240
FWRNNNNQNQ PPPSHHQQNG FIVGHEVQSS NIGIQELFQR LRSTTSQSGS YYSNHLNNVV  300
MSSSSSSLSS SSTSLILDSA PVVGGGEMSY WNPAFTAWSS DLPTTNGAYH *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr025072.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	3e-40	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009366405.2	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	D9ZIY2	0.0	D9ZIY2_MALDO; DOF domain class transcription factor
STRING	XP_009366405.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	8e-34	TARGET OF MONOPTEROS 6