PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025045.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 402aa    MW: 46449.4 Da    PI: 8.5257
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025045.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19e-15698199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                 ffk+ + +d  +++ l lp + +  +g     + +++l+ ++g++W + l  + ++g+++l kGW++F++   L+ g  ++F+++g+ s f  +v++f +
  Pbr025045.1  6 FFKIVMEKDLQERK-LKLPESAVVMYGDY--LGDKVVLKVPNGEKWPIGL--TSRDGKVWLNKGWSKFAEFYSLDHGNLLIFSFEGDqSHF--HVRIFAR 98
                 89999999999998.***********755..6679***************..9999*****************************987777..9999976 PP
2B331.53.1e-10128216599
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      d+l+ g + +p     +++     + +++le ++g +W v+l  ++++++++l+kGW +F++   L+ g  ++F+++g  s f   v++fr+
  Pbr025045.1 128 V-LDDTLRDGKIKIPPIGSMKYEDF--IGDKMVLEVPNGPVWPVEL--SRRDCEIWLQKGWLKFARFYFLELGCLLLFTYKGVySHF--QVRIFRR 216
                  3.36788888899998888888433..4558***************..**********************************99999..*****98 PP
3B3536.2e-173093971298
                  HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  +++ l lp  fa+eh  ++   ++ ++tl+ ++ rsW+vk+i+   + + ++ +  +GWk F+++n+L+egD++vF+++ + s+  l+v +fr
  Pbr025045.1 309 STH-LKLPIYFAQEHicES---GEHKVTLKISDMRSWSVKCIIqlyNCQTCARFQDNGWKAFARDNRLEEGDVCVFEVIPNtSKCALKVYIFR 397
                  555.99*********6532...3348***************986543333345667*********************9966688889999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-204100IPR015300DNA-binding pseudobarrel domain
CDDcd100176.08E-16596No hitNo description
PROSITE profilePS5086312.407599IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-19599IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-10699IPR003340B3 DNA binding domain
PfamPF023622.4E-11698IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-15121217IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-15121217IPR015300DNA-binding pseudobarrel domain
CDDcd100179.19E-14122215No hitNo description
PROSITE profilePS508639.7123217IPR003340B3 DNA binding domain
SMARTSM010190.0034124217IPR003340B3 DNA binding domain
PfamPF023624.8E-8125217IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-19291399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17292397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.702297399IPR003340B3 DNA binding domain
SMARTSM010198.0E-6298399IPR003340B3 DNA binding domain
PfamPF023623.0E-15305397IPR003340B3 DNA binding domain
CDDcd100178.41E-15306397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MASSSFFKIV MEKDLQERKL KLPESAVVMY GDYLGDKVVL KVPNGEKWPI GLTSRDGKVW  60
LNKGWSKFAE FYSLDHGNLL IFSFEGDQSH FHVRIFARSC LEKDFGSFRN GKGPAFPLNA  120
PPSFFKVVLD DTLRDGKIKI PPIGSMKYED FIGDKMVLEV PNGPVWPVEL SRRDCEIWLQ  180
KGWLKFARFY FLELGCLLLF TYKGVYSHFQ VRIFRRNTLE MDYFNLRDED ETDSNSIGEI  240
ECQRMKHDEE TRTHGGDGGM SAAHRSPKVL LRTGQSELED KTERAFAKAR SFKSRNPFAV  300
IRMRPLYIST HLKLPIYFAQ EHICESGEHK VTLKISDMRS WSVKCIIQLY NCQTCARFQD  360
NGWKAFARDN RLEEGDVCVF EVIPNTSKCA LKVYIFRDKD Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025045.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953988.10.0B3 domain-containing protein Os12g0592300-like
TrEMBLA0A498KNH50.0A0A498KNH5_MALDO; Uncharacterized protein
STRINGXP_009367937.10.0(Pyrus x bretschneideri)
STRINGXP_008339503.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2306834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-22B3 family protein