PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025044.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 834aa    MW: 95354.9 Da    PI: 9.5249
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025044.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.2e-18221141100
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+  p+d+++   l++p kf++++g++   s  + l+ +sg +We+++  r++ g +++ +GW eF +   L+ gD++vF+++g+s+f  +v +f+
  Pbr025044.1  22 FFKII-PNDASRYTKLRIPEKFVNKYGEN--ISNPILLKLPSGVEWEIQV--RNCNGDIWFDEGWPEFSEFYSLDYGDSLVFRYEGNSKF--HVCIFD 112
                  66655.99******************977..6667***************..**********************************9999..*****9 PP

                  SS CS
           B3  99 ks 100
                  +s
  Pbr025044.1 113 RS 114
                  85 PP
2B3444e-143083831899
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +pkkf++++g++   s  + ++ +sg +We+++  ++++g++++ kGW +F +   L  gD ++F+++++s+f  +v +f++
  Pbr025044.1 308 IPKKFVNNYGEN--LSNPVHFKLPSGAEWEIEV--TRRGGEVWFDKGWPKFSEFYSLGYGDCLIFRYEWNSKF--HVFIFDR 383
                  9*****999966..7778***************..***********************************999..9999987 PP
3B365.86.5e-21482567394
                  EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  kv +++++  s+ l+lp +fa+++  + +++    +l+ ++gr+W+vk++y++k+ r++l+  W  Fv++n+Lk gD++vF+l++   f+ ++
  Pbr025044.1 482 KVAMQPSYIFSQ-LILPSEFAKKYlTQHPTG--SAILRVPDGRTWNVKFKYDNKRARFLLG--WPAFVEDNNLKIGDVCVFMLIKG--FKITF 567
                  555566666665.9**********7434444..5999********************9886..*******************9974..44433 PP
4B343.84.5e-14743832498
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  v+ ps+v++s  l++p +f +++  kk++   ++    + r W v l++ ++k     l++GW  F+k n L egD+++F+l +r++ +l+v +fr
  Pbr025044.1 743 VMQPSYVTQSY-LRIPTSFSKNFIDKKKQ---IVKLWVDDRMWHVSLTVhWRKA--LKLSAGWAAFAKGNCLTEGDVCIFELLDRNNISLKVYIFR 832
                  66677777776.*******9666434333...44455677*******6657766..77***********************999999999**9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2315114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2216114IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-1920112No hitNo description
PROSITE profilePS5086314.53621114IPR003340B3 DNA binding domain
PfamPF023623.3E-1522113IPR003340B3 DNA binding domain
SMARTSM010192.1E-1922114IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-8229307IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-10229306IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.077230306IPR003340B3 DNA binding domain
CDDcd100178.49E-7232306No hitNo description
SMARTSM010191.5E-7296384IPR003340B3 DNA binding domain
CDDcd100175.36E-14307382No hitNo description
SuperFamilySSF1019368.24E-19307384IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-19307384IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.055308384IPR003340B3 DNA binding domain
PfamPF023629.6E-11308383IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-25474574IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-24474573IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-23479573No hitNo description
PfamPF023621.8E-18481569IPR003340B3 DNA binding domain
SMARTSM010198.1E-18481575IPR003340B3 DNA binding domain
PROSITE profilePS5086313.888494575IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-20734832IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-19735832IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-16738832No hitNo description
PROSITE profilePS5086312.28739833IPR003340B3 DNA binding domain
SMARTSM010191.1E-4740833IPR003340B3 DNA binding domain
PfamPF023623.1E-11742832IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MASLLPETDR ARPTFSATTP HFFKIIPNDA SRYTKLRIPE KFVNKYGENI SNPILLKLPS  60
GVEWEIQVRN CNGDIWFDEG WPEFSEFYSL DYGDSLVFRY EGNSKFHVCI FDRSATEIEY  120
PLPFPEDEET DEDDDESVEV LEDFPPCPRT RQKSPLPCPL PRMKKRISTS SGKCKMGKIN  180
GRHVSQRPCT SSLSASEVAN KSKISNQVAQ RLSCLKASRV LEAANKFIPK NPFFRATVRS  240
PSKPMYVPAE FAKRLKLQKK QIAALRVGEQ LWPVNIIGYN NEGNRHSHIS GGWRVFAEEN  300
RLRKGDRIPK KFVNNYGENL SNPVHFKLPS GAEWEIEVTR RGGEVWFDKG WPKFSEFYSL  360
GYGDCLIFRY EWNSKFHVFI FDRSATEIEY PLPLPGMEET DEDDDESVEI LEDFPPCPKT  420
RQKSPLPSPL PHKRKRISTS IGSTSKKLET KSTLWMKTLT ENEKAIALQR AIDFKSENPH  480
FKVAMQPSYI FSQLILPSEF AKKYLTQHPT GSAILRVPDG RTWNVKFKYD NKRARFLLGW  540
PAFVEDNNLK IGDVCVFMLI KGFKITFEVA FYRSKEAAIC SISSAAKECS GGLRTAQRGQ  600
EPFTISERSR AYKSYTSLDE PDYEDKDEDS VGISDFQRCT RKTREKSPLP SPQPLKKIRT  660
SNKAAKKRNI NFRPTKIEPR SKSAVNREDE SDDDSVVSLH KSASCPKNIE KSLLAPTTSG  720
KAIALERAIA FCSKSVNPSF WIVMQPSYVT QSYLRIPTSF SKNFIDKKKQ IVKLWVDDRM  780
WHVSLTVHWR KALKLSAGWA AFAKGNCLTE GDVCIFELLD RNNISLKVYI FRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1545757625144B3 domain-containing transcription factor VRN1
4i1k_B3e-1545757625144B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025044.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505420.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A498KNH50.0A0A498KNH5_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-35B3 family protein