PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025043.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 732aa    MW: 83611.9 Da    PI: 8.0323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025043.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-17160242287
                  EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  fkv +++++   + l+lp  fa++h ++++ +    +l+ ++g +W vkl+    +g++ +++GW eFv++n+Lk+gD++vF l++ 
  Pbr025043.1 160 FKVAMQPSYIFGH-LILPAGFAKRHlMHQPDG--NAILRLPDGGTWCVKLKL-YEKGKVRFQRGWLEFVRDNNLKTGDVCVFILIKG 242
                  4566666666666.9**********8666655..69999***********64.3334688**********************98864 PP
2B350.14.9e-16496583899
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + +  s+ l lp +f+++h  +k++s  ++l+ ++g +  v+++y+ ++    +++GW+ F+++n+Lk+gD +vF+l++r+e ++ v +fr+
  Pbr025043.1 496 PAYIHSSYLGLPSEFVRTHL-NKQRSSNVILQILDGSTCPVNFKYDVTP---RFQNGWSVFARENNLKVGDLCVFELINRNELTFEVVFFRA 583
                  555667779**********4.44567799999999*9999999888888...48************************99999999999987 PP
3B347.53.1e-15635722898
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ lk +  ++p kfa ++ ++k+++ tl+      r W v+li  ++ ++++++++GW  F+++n L++gD+++F+l+++++  l+v++fr
  Pbr025043.1 635 PSCLKAS-RYVPVKFAMRFPLQKAQTATLQ---VGERFWPVNLIGyTNERRQMIISGGWLAFAEENSLRTGDVCTFELVETNDIVLKVHIFR 722
                  4444444.688********99988854444...477*******765999999***************************999999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.448175IPR003340B3 DNA binding domain
CDDcd100171.51E-7273No hitNo description
Gene3DG3DSA:2.40.330.102.3E-13276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-14276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-23153246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-22153246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-22158253No hitNo description
PfamPF023628.1E-15160242IPR003340B3 DNA binding domain
SMARTSM010191.2E-17160255IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52173255IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-18482583IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17483583IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589489584IPR003340B3 DNA binding domain
SMARTSM010195.1E-12490584IPR003340B3 DNA binding domain
PfamPF023623.0E-14495583IPR003340B3 DNA binding domain
CDDcd100171.33E-17498582No hitNo description
PROSITE profilePS5086311.632627724IPR003340B3 DNA binding domain
SMARTSM010195.0E-17628724IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-17631722IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-18632723IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-13634722IPR003340B3 DNA binding domain
CDDcd100174.76E-16643722No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MKFVLKYGEE LSSPVYLRLP CGSEWEIELR RCNGEVWFEK GWPEFSKFYS LDYAFWLVFG  60
YEGNSRFHVF IFDRSCTEVD YPIKLPEKEK TDDEDHESVE ILDDFPTSRR RKGEKHLSLP  120
CPLPPKKKRR SYSRMHPLTD KDKAIALQRA IDFKSEKPHF KVAMQPSYIF GHLILPAGFA  180
KRHLMHQPDG NAILRLPDGG TWCVKLKLYE KGKVRFQRGW LEFVRDNNLK TGDVCVFILI  240
KGIELAFEVV FYRGGHAKGA RATDRGKWEI GTSSSHNPYA GKECSGGLNL ETGYEDHDDK  300
SVEILDDLCP RKSRDKSQVM PKLEETDNHD DDSNDDISRD SDEVQSDPTI PEEEETDYED  360
DESVEILDDF SPCPRKAREK SPLPCLRRHK KMRTCSSSKA AECNTSFTAT KTQPYEIKKS  420
FRSKDSHCSK SEVKREHDFP TMKEVGGLSS SPIFQKRTPD VLGREHALTK SEKALALQRA  480
NAFKSAYPSF PVAIQPAYIH SSYLGLPSEF VRTHLNKQRS SNVILQILDG STCPVNFKYD  540
VTPRFQNGWS VFARENNLKV GDLCVFELIN RNELTFEVVF FRATEAKKCS SSADHGGGAI  600
DQVEIKRRSR CKVKSGCENG EYTKLKISDQ VTQTPSCLKA SRYVPVKFAM RFPLQKAQTA  660
TLQVGERFWP VNLIGYTNER RQMIISGGWL AFAEENSLRT GDVCTFELVE TNDIVLKVHI  720
FRSLGKVLNF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1413325322141B3 domain-containing transcription factor VRN1
4i1k_B3e-1413325322141B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109129RRKGEKHLSLPCPLPPKKKRR
2125129KKKRR
3309315PRKSRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025043.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505416.10.0PREDICTED: uncharacterized protein LOC108867956
TrEMBLA0A498KHT00.0A0A498KHT0_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1657124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-19B3 family protein