PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 210aa MW: 23883.9 Da PI: 7.2364 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.8 | 1.7e-17 | 67 | 138 | 17 | 92 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++p kf+++h ++ ++ t+tl+ ++gr+W+vk+ ++ +++++ l +GW Fv++n+L++gD++vF l+++sef + Pbr025042.1 67 TVPSKFVNAHLIE--QPSTITLRVSDGRTWRVKVGFQTRGCQF-L-AGWITFVRDNELDVGDVCVFVLINKSEFLF 138 79*****999655..6669***************887777775.3.6*********************99888833 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.3E-8 | 55 | 146 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-19 | 66 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-18 | 66 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.8E-15 | 67 | 139 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.40E-16 | 67 | 139 | No hit | No description |
PROSITE profile | PS50863 | 12.393 | 68 | 146 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.53E-8 | 159 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-6 | 159 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.909 | 163 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MKRGHDHVIH RKTPRNHENQ NVDNRGLKGS TYGTRTSQVT TPIQDEGYEA TDDTDSQTLM 60 HPRWLQTVPS KFVNAHLIEQ PSTITLRVSD GRTWRVKVGF QTRGCQFLAG WITFVRDNEL 120 DVGDVCVFVL INKSEFLFEA VFYRKEEAEN HHISSPAGAR GRFIGGWSAF RQDNDLKLDD 180 VCVFVLVNKV ELFEVAFYRK PEAANICAL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025042.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018501901.1 | 2e-62 | PREDICTED: protein root UVB sensitive 4-like | ||||
TrEMBL | A0A498I034 | 6e-39 | A0A498I034_MALDO; Uncharacterized protein | ||||
STRING | XP_009351291.1 | 6e-62 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16060 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18090.1 | 7e-09 | B3 family protein |