PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024864.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 268aa    MW: 29595 Da    PI: 7.943
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024864.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM591.6e-18257082128
          NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  yWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  Pbr024864.1  25 YWKATGTDKVITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 70 
                  8**********99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.681193IPR003441NAC domain
SuperFamilySSF1019414.18E-271693IPR003441NAC domain
PfamPF023651.6E-81670IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVLFQSEGPE IPEWVATQSG CWVRYWKATG TDKVITTEGR KVGIKKALVF YVGKAPKGTK  60
TNWIMHEYRL IEPSRKNGSS KLDEWVLCRI YKKSSGSAAA AAAQKPVTSV SSKEHSNGSS  120
SSCSSQLDDV LEWLPDIDDQ NFTLPRINSL KTLLQQQDSK INFQNTSSGN FDWATLAGLN  180
SAPELNLNNQ TEQGQGQMNL NFNNNDVSPF NPASLPRGMA AGEVGKTAEE EVQSGLRTQR  240
VDNSNFFQQH SQNICYPVRP SVFGLWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-41259797169NO APICAL MERISTEM PROTEIN
1ut4_B9e-41259797169NO APICAL MERISTEM PROTEIN
1ut7_A9e-41259797169NO APICAL MERISTEM PROTEIN
1ut7_B9e-41259797169NO APICAL MERISTEM PROTEIN
3swm_A9e-412597100172NAC domain-containing protein 19
3swm_B9e-412597100172NAC domain-containing protein 19
3swm_C9e-412597100172NAC domain-containing protein 19
3swm_D9e-412597100172NAC domain-containing protein 19
3swp_A9e-412597100172NAC domain-containing protein 19
3swp_B9e-412597100172NAC domain-containing protein 19
3swp_C9e-412597100172NAC domain-containing protein 19
3swp_D9e-412597100172NAC domain-containing protein 19
4dul_A9e-41259797169NAC domain-containing protein 19
4dul_B9e-41259797169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024864.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981170.0KF198117.1 Malus hupehensis NAC domain protein (NAC33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334627.21e-178PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 72
SwissprotA0A3Q7HH642e-69JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A498KB811e-141A0A498KB81_MALDO; Uncharacterized protein
STRINGXP_009334627.11e-178(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.29e-62NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]