PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr024837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 153aa MW: 17184.8 Da PI: 9.573 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.2 | 1.5e-13 | 41 | 130 | 10 | 97 |
HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +++rl++pk+ ae+h + +++ + ++d++gr+W++++ ++++ + yvl+ G +++ n+ ++gD v F+++ se++l ++ + Pbr024837.1 41 HPNNARLIIPKRAAEAHfpAIREKQRLPIAMRDSTGREWRFTYVCWRNGMTvmYVLE-GLNGYMLINQWRAGDKVAFHRIV-SEGKLQIRTI 130 34569**************555556667***************88888888767777.********************775.7777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-13 | 30 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-12 | 30 | 131 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-17 | 30 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.5E-4 | 31 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.769 | 32 | 133 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-10 | 41 | 130 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MLCKSSSDYV NGKLCETFHI GQDGWVNCTL CSKTITATDT HPNNARLIIP KRAAEAHFPA 60 IREKQRLPIA MRDSTGREWR FTYVCWRNGM TVMYVLEGLN GYMLINQWRA GDKVAFHRIV 120 SEGKLQIRTI KAASSDPPAL AKEQSPTDKN QV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 1e-19 | 30 | 135 | 22 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 1e-19 | 30 | 135 | 22 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 1e-19 | 30 | 135 | 22 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 1e-19 | 30 | 135 | 22 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 1e-19 | 30 | 135 | 22 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 1e-19 | 30 | 135 | 22 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 1e-19 | 30 | 135 | 23 | 127 | B3 domain-containing transcription repressor VAL1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr024837.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A251PMV4 | 8e-35 | A0A251PMV4_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A314YWC5 | 1e-34 | A0A314YWC5_PRUYE; B3 domain-containing transcription factor VAL3-like | ||||
STRING | XP_008226707.1 | 1e-34 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15978 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 7e-20 | high-level expression of sugar-inducible gene 2 |