PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024517.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 263aa MW: 29289.3 Da PI: 7.9736

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024517.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.4e-10	174	217	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ + K++ +++LekA+ Y+k Lq Pbr024517.1 174 IAAKNRRERISERLKMLQELVPNgC------KVDLVTMLEKAISYVKFLQ 217 5679*****************77......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-12	166	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-13	166	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.87E-12	169	221	No hit	No description
SMART	SM00353	2.5E-11	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-7	175	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MPYYYRPLNL QRATSSYQPD QLINFKSGYY NSGESLLCFD KNKKNSQSIY LNSSASKDNC 60 DSDLHHGSYS QWNQTTGIGD HSLSGDLNWF QTASNYSSSI PSTSKEDHGD HEAYGWIYSE 120 ATDNFQQSHE QEAGFHNRPI TGESMQPSKK QCTSATKKPK PKSSTSASKD PQSIAAKNRR 180 ERISERLKML QELVPNGCKV DLVTMLEKAI SYVKFLQLQV KVLATDEFWP VQGGKAADIS 240 QVKEAIDAIL SSSQRDTSSS SK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024517.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009334414.2	0.0	PREDICTED: putative transcription factor bHLH086
Swissprot	Q9FJ00	3e-62	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A498HAW1	1e-163	A0A498HAW1_MALDO; Uncharacterized protein
STRING	XP_009334414.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	3e-53	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]