PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024493.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 274aa MW: 29976.1 Da PI: 8.2351

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024493.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.3e-39	22	82	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+ Pbr024493.1 22 PQEQLNCPRCSSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 82 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	17	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-33	24	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.751	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEDHEMGSNG CTRSVLEKRA RPQEQLNCPR CSSINTKFCY YNNYSLTQPR YFCKTCRRYW 60 TEGGTLRNVP VGGGSRKNKK STSSSASVSS KITIPDLNPP TTLSHFSSSH QNPRVTHEGQ 120 DLNLAFDSID AHYHGTTMEN NNSTNSSSAP NLSAMELLRT GIASRGVNSF MPTQNMPDHH 180 SNTVLCPPSS AGFLLQEFKP TSLGFCVDGL GNRYGGDDHE NVNGGRILFP FGDHHLKQIS 240 STAGHHEVLD RHQNKGQGNP TGYWNGLLGG GSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024493.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM478502	3e-46	AM478502.2 Vitis vinifera contig VV78X197834.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009334364.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
Swissprot	Q43385	7e-61	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A498JAR7	1e-179	A0A498JAR7_MALDO; Uncharacterized protein
STRING	XP_009334364.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-55	Dof family protein