PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024139.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 233aa    MW: 26328.8 Da    PI: 8.3169
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024139.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.38.4e-2654143189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                  +fY++YA+++GF +r+ + ++s+ +++i +r++ C+k+g r+ + ++  ++ rr++++t  gCka++ vk++k+gkw++t+++++H+H+l
  Pbr024139.1  54 EFYEDYARRAGFIMRIGQCRRSHVEKRILSRKLSCNKQGGRSVKARDqVRSVRRPQPTTGEGCKAMMLVKLKKSGKWVITRVVKDHTHPL 143
                  6****************************************99998845567889*********************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-2554144IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEHRFDRRPR PWLGLIGSDP KSPGAPETSV ERDLNAVGEP YVGMEFESED AAKEFYEDYA  60
RRAGFIMRIG QCRRSHVEKR ILSRKLSCNK QGGRSVKARD QVRSVRRPQP TTGEGCKAMM  120
LVKLKKSGKW VITRVVKDHT HPLIVSSGNS MDAKDMKIAE LTLDLEREEQ LCGQYRELLL  180
TLLNNVEEET EDIATKVRGV VNYVREFETQ VEGIPENQME SSSRASSKSN GD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024139.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334239.11e-173PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A498IX101e-128A0A498IX10_MALDO; Uncharacterized protein
STRINGXP_009334239.11e-172(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-54FAR1 family protein