PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr024139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 233aa MW: 26328.8 Da PI: 8.3169 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.3 | 8.4e-26 | 54 | 143 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GF +r+ + ++s+ +++i +r++ C+k+g r+ + ++ ++ rr++++t gCka++ vk++k+gkw++t+++++H+H+l Pbr024139.1 54 EFYEDYARRAGFIMRIGQCRRSHVEKRILSRKLSCNKQGGRSVKARDqVRSVRRPQPTTGEGCKAMMLVKLKKSGKWVITRVVKDHTHPL 143 6****************************************99998845567889*********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.0E-25 | 54 | 144 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEHRFDRRPR PWLGLIGSDP KSPGAPETSV ERDLNAVGEP YVGMEFESED AAKEFYEDYA 60 RRAGFIMRIG QCRRSHVEKR ILSRKLSCNK QGGRSVKARD QVRSVRRPQP TTGEGCKAMM 120 LVKLKKSGKW VITRVVKDHT HPLIVSSGNS MDAKDMKIAE LTLDLEREEQ LCGQYRELLL 180 TLLNNVEEET EDIATKVRGV VNYVREFETQ VEGIPENQME SSSRASSKSN GD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr024139.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009334239.1 | 1e-173 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
TrEMBL | A0A498IX10 | 1e-128 | A0A498IX10_MALDO; Uncharacterized protein | ||||
STRING | XP_009334239.1 | 1e-172 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-54 | FAR1 family protein |