PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023902.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 328aa    MW: 36819.4 Da    PI: 6.5499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023902.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20186237256
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g+
  Pbr023902.1 186 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRGA 237
                  8********.**********9...4334**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.97E-31185244No hitNo description
Gene3DG3DSA:3.30.730.101.8E-32185245IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23186245IPR016177DNA-binding domain
SMARTSM003809.1E-36186250IPR001471AP2/ERF domain
PROSITE profilePS5103224.21186244IPR001471AP2/ERF domain
PfamPF008472.1E-14186236IPR001471AP2/ERF domain
PRINTSPR003671.8E-13187198IPR001471AP2/ERF domain
PRINTSPR003671.8E-13226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MALDQVSALE LIKHHLLGES FATELSDFAS TFPQNQWSPE VNSDLSRSQS DSFCSKSSST  60
FESSIEISDY LDSTDIFDFN SADFFDFEPK PQVIDLTTPK STSLSSQSSF EFDSKPQVSD  120
DFFEFEKKPQ IPNQTAIKPA NPTRKPALTI SLPNKTEWIQ FASSDQAAAK PAAVQKVRSN  180
EEKKKHYRGV RQRPWGKYAA EIRDPNRRGS RVWLGTFDTA IEAAKAYDRA AFKLRGAKAI  240
LNFPLEAGKA EPVVSVERKR RREQQRDEAK EVVVVKKEKL TETPLTPSSW MSFWESEKED  300
VKGVFSIPPL SPLSPHPAMG YPQVMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29183251270ATERF1
3gcc_A2e-29183251270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257261RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023902.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324320.0GU732432.1 Malus x domestica AP2 domain class transcription factor (AP2D8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333696.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803411e-70EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A498JN730.0A0A498JN73_MALDO; Uncharacterized protein
STRINGXP_009333696.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-48ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]