PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023838.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 356aa    MW: 38527.9 Da    PI: 9.4218
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023838.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.7e-32165221158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k+rkpylheSRh hAlrR+Rg+gGrF
  Pbr023838.1 165 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKARKPYLHESRHLHALRRARGCGGRF 221
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.9E-38163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.512164224IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-27166221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-23167189IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860169189IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-23198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMPAKSKDED PHIKHGAQTV LQPIYSQPWW RGGGNGSASS LVDHSNSMVM NGAMQAQPNA  60
RLDGGGANFH KELRTTVGLQ PDGNNGSENQ HIKSVSSSVV PALGEHVDPN SQMELVGHSI  120
VMSSYPYSDP QYGGILTPYG PQAMLPPHFY GMHPGRMPLP LDMEEEPVYV NAKQYHGILR  180
RRQSRAKAEL EKKLIKARKP YLHESRHLHA LRRARGCGGR FLNTKKQDAN NENSSLEKGM  240
NLDGNHSGQS AKSGFECFPN TSNADVDSSN VQQDGSGPWF RTHNHHTRSN GNGTDRGPSS  300
AYPSAFGDSR ENMQLKGSSR GAIPSEAQGV HGLSWGKPGC AMSLSGKSFL ALVTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20165229266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023838.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354754.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A498JKA60.0A0A498JKA6_MALDO; Uncharacterized protein
STRINGXP_009354754.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.15e-38nuclear factor Y, subunit A7