PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023818.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 410aa    MW: 46218.4 Da    PI: 7.1584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023818.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06326226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k++lC+ffa  G C  G+ C F+H+
  Pbr023818.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                 99****6666.*************5 PP
2zf-CCCH21.93.1e-073454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C f+++ G C +G+rC++ H+
  Pbr023818.1 34 ICTFYLK-GACAFGSRCRYEHV 54
                 7******.***********997 PP
3zf-CCCH19.12.4e-06143165326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C+ fa+ G C++G++C+ +Hg
  Pbr023818.1 143 HAICS-FAAAGNCPRGEKCPHIHG 165
                  57899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1172956IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-53253IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.42E-13198273No hitNo description
Gene3DG3DSA:3.30.40.102.2E-9204269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.40E-4208268No hitNo description
PfamPF136395.3E-7208267IPR001841Zinc finger, RING-type
SMARTSM001841.4E-7209266IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.43209267IPR001841Zinc finger, RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.054296324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347296325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYLK GACAFGSRCR YEHVKASRAQ  60
SFGSSSSTNS QPSLVIDSAS LVLPARTLAS GVSLAPLSLS ELSASSSPFL PPSKPAWNGS  120
LDGDYDDDEG SVGETRNTRP EDHAICSFAA AGNCPRGEKC PHIHGDICPS CGKHCLHPYR  180
HLEREEHMKI CKEKQKQLEA LKCSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY KSKEEKQEIV DSYKARLRSI  300
DCKHFDFGNG NCPFGTSCFY KHTVKPGSYV WKFHRPPPRR PPPRRPPPRR YDIAPMDVIF  360
HMFEHLEELD DYIFEDLENE VLNSWERESL MQMGLYTSDS SEDEIDLWP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023818.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354722.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1
SwissprotE0X9N41e-145C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLM5XJS30.0M5XJS3_PRUPE; Uncharacterized protein
STRINGXP_009354722.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-132C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]