PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr023800.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 435aa MW: 48465.5 Da PI: 7.478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr023800.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.1	2.1e-10	369	414	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P +k + ae+L +Ave+Ik+Lq Pbr023800.1 369 SIAERMRRMRISERMKKLQDLFPDM----DKQINTAEMLDLAVEFIKDLQ 414 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.281	363	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-13	366	427	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.15E-9	367	418	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-13	368	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-9	369	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-7	369	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MSSLLYKYNP NFKASEVELR KNHTAEFMDS NIFQQQHPQQ QQQSSSLTRY RSAPSSFLME 60 LMDNNGGGGG GVEDLRYLQP SSPEVETVLA RFISSCNEPD HHDNGVQHHQ FEIEERPVNV 120 KEESGDSVSN HSNGYSNSTH MMYQAPQAQQ VHGLDSSSFA AVNSTVMENS MMQSKIGVGN 180 RSNLVRQSSS PAGFFPNLTV DNGFNVMKDS AGYRAGNGVS GEANPSTSRL GNQLNFSSRP 240 SSYSHRMPRI AENENGNSGE GSQPQPNHGL GDANGSNSHY HSSFPNDSWE NSSFNDLKRA 300 RDNDGNKFST SIAFKSQNND LGNCNHGLTQ HLSLPKQFEM PAMEKYLQFE DSIPCKIRAK 360 RGFATHPRSI AERMRRMRIS ERMKKLQDLF PDMDKQINTA EMLDLAVEFI KDLQKQVKTL 420 KDTKAKCSCS SKQK*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MSSLLYKYNP NFKASEVELR KNHTAEFMDS NIFQQQHPQQ QQQSSSLTRY RSAPSSFLME  60
LMDNNGGGGG GVEDLRYLQP SSPEVETVLA RFISSCNEPD HHDNGVQHHQ FEIEERPVNV  120
KEESGDSVSN HSNGYSNSTH MMYQAPQAQQ VHGLDSSSFA AVNSTVMENS MMQSKIGVGN  180
RSNLVRQSSS PAGFFPNLTV DNGFNVMKDS AGYRAGNGVS GEANPSTSRL GNQLNFSSRP  240
SSYSHRMPRI AENENGNSGE GSQPQPNHGL GDANGSNSHY HSSFPNDSWE NSSFNDLKRA  300
RDNDGNKFST SIAFKSQNND LGNCNHGLTQ HLSLPKQFEM PAMEKYLQFE DSIPCKIRAK  360
RGFATHPRSI AERMRRMRIS ERMKKLQDLF PDMDKQINTA EMLDLAVEFI KDLQKQVKTL  420
KDTKAKCSCS SKQK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr023800.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354701.1	0.0	PREDICTED: transcription factor bHLH130-like
Refseq	XP_009354702.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	A0A498JH24	0.0	A0A498JH24_MALDO; Uncharacterized protein
STRING	XP_009354701.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-47	bHLH family protein