PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023774.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 370aa    MW: 40908.1 Da    PI: 7.3684
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023774.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-17196250256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqN+Ra+ k
  Pbr023774.1 196 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNKRARTK 250
                  788899***********************************************98 PP
2HD-ZIP_I/II124.45.3e-40196286192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L l+prqv+vWFqn+RARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Pbr023774.1 196 RKKLRLSKEQSAFLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNKRARTKLKQTEVDCEFLKRCCETLTEENRRLNKELQELR-ALK 286
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-18186253IPR009057Homeodomain-like
PROSITE profilePS5007116.811192252IPR001356Homeobox domain
SMARTSM003895.8E-15194256IPR001356Homeobox domain
PfamPF000469.8E-15196250IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-16196250IPR009057Homeodomain-like
CDDcd000865.50E-15196253No hitNo description
PROSITE patternPS000270227250IPR017970Homeobox, conserved site
SMARTSM003403.7E-21252298IPR003106Leucine zipper, homeobox-associated
PfamPF021832.0E-10252286IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MELCLSLGGH EEPAERSDQN TTTTTKTTEF CMSLSIGPSC AAGTTSTPHR PPRHEAAAAD  60
KKQDDDDGDH IHVDDRVPLQ LDLLLWPTSP CNRIQNAGVL SMNVINRVEE VVAAASSTHT  120
NSGSSSFQIM DIGSNNHSKG SAGDDLNNNY HNVYNYKRRA HSAEAGDDEG ERASNSRVGS  180
DEEEDDIING NTNTSRKKLR LSKEQSAFLE ESFKEHHTLN PKQKLALAKQ LSLRPRQVEV  240
WFQNKRARTK LKQTEVDCEF LKRCCETLTE ENRRLNKELQ ELRALKATHH SNPFSMQSPA  300
TTLTMCPSCE RTATTANPAS KTTNNTNNNN NNKVESTSAT KVQAAKFPPK RPSFYPFFQP  360
KSHPSSAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200SRKKLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023774.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354678.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
TrEMBLA0A498JKI80.0A0A498JKI8_MALDO; Uncharacterized protein
STRINGXP_009354678.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1891346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-61homeobox from Arabidopsis thaliana