PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr023570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | CO-like | ||||||||
Protein Properties | Length: 425aa MW: 45893.8 Da PI: 7.7546 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.4e-06 | 17 | 60 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +++ + lfC+ + ++lC C + +H H++v+ Pbr023570.1 17 KLCDSCKNSAAALFCRADLTFLCLPCDTRIHIAnklttrHERVS 60 68******99*********************3356777788775 PP | |||||||
2 | zf-B_box | 26.9 | 9.9e-09 | 59 | 104 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +++ ++ C+ + lC C + +H+ H++vp+ Pbr023570.1 59 VSMCEVCDQAPAAVICKADAAVLCVACKVDIHSAnpltqrHERVPV 104 578*****************************66899999999986 PP | |||||||
3 | CCT | 64.7 | 2.8e-22 | 351 | 394 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkF+K+irY sRK++Ae+RpR+KGrF+k++ Pbr023570.1 351 REARVLRYREKRKNRKFQKTIRYVSRKVYAETRPRIKGRFTKRT 394 9****************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.2E-12 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.424 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.2E-6 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.57E-8 | 18 | 61 | No hit | No description |
PROSITE profile | PS50119 | 10.95 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.9E-7 | 59 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.08E-9 | 61 | 104 | No hit | No description |
SMART | SM00336 | 1.2E-8 | 62 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.2E-17 | 351 | 393 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.122 | 351 | 393 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MGLKGGWSAA AVGLVAKLCD SCKNSAAALF CRADLTFLCL PCDTRIHIAN KLTTRHERVS 60 MCEVCDQAPA AVICKADAAV LCVACKVDIH SANPLTQRHE RVPVEPFYDS AESIIAKSTA 120 AAPSFVGAAI NYLVPNGNVL SNTKDVDNDP ASNWLIPNSN FNSKLPMDIA PNITKSSGDL 180 FFPEMDLLLE FNNPNSIHTI SGPGTDSVVP VQTDPIPPPS LKMNHNISGP ADQNCFDMDF 240 CGSKFSSSFS YPTQSLSQSV SSSSLDVGVV PDQNSLSDIS YPFGRTACNS ISEPGDVSYS 300 FGQKTSNNVS EPGDISYPFG QKASNNVLEP SARVSATPAS QPATQLCGLN REARVLRYRE 360 KRKNRKFQKT IRYVSRKVYA ETRPRIKGRF TKRTKTETET FDLIYGSGSA TFISDPQFAV 420 VPTF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr023570.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009379498.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like isoform X1 | ||||
TrEMBL | A0A498HN95 | 0.0 | A0A498HN95_MALDO; Uncharacterized protein | ||||
STRING | XP_009379498.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 4e-92 | CONSTANS-like 5 |