PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr023528.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 27132.7 Da PI: 8.2193 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.5 | 1.3e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+++e Pbr023528.1 2 SCNGCRVLRKGCSDTCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTINPVNGAVGLLWTGNWHVCQAAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Pbr023528.1 100 TVLR 103 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.505 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDTCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PVLFQSLLFE ACGRTINPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PELLGGASTP 120 DEASEADVGG VTISTDMWRL RDLSHNSGSS SRFTSSRSAR ASSPKRKRSA AADESSTKLL 180 QLQQHADLDL QLTPTPSFKP KPKPETRRPG TPSMNSDESG VTTCFESGFE DQHPYSYAVG 240 TERKLLNLFP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr023528.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009379314.1 | 0.0 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 9e-87 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A498I0N0 | 1e-165 | A0A498I0N0_MALDO; Uncharacterized protein | ||||
STRING | XP_009379314.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 3e-78 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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