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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pbr023249.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family |
BBR-BPC |
Protein Properties |
Length: 312aa MW: 35079.6 Da PI: 9.9168 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr023249.1 | genome | CPETR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 349 | 1e-106 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79
mdd ++e r+k yy+ ++ ++l +++++ms+iaerda+irern+al+ek++a+a+rd+a+ qrd+ala+r+ a++erdn
Pbr023249.1 1 MDDGRQHEngRHKMdYYRggtappwnmmaqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALAEKNEALAARDEALRQRDEALAQRDSAMMERDN 96
6776665558999889999999999999987653345666..99****************************************************** PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskk 176
+++al ++n+ + p g ++ +g+k ++ + + l+d + +++++++ea+p++ +e +++++k rak++k+++a+ + kk +e+ ++
Pbr023249.1 97 AYAALHSRDNA--VNFPLGGGAPRGAKRMHRPSN-HSVTLADAHYSTKDMHITEAYPVSLISTEDVKSRQTK---RAKENKASRARqSWKKVGEDLNR 188
*******9998..667889999********8777.889*********************9888888887777...55555555555256677778877 PP
GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
+ ++++ + ++e++ dl+ln v++Des++PvPvCsCtG++rqCYkWGnGGWqS+CC t +S+yPLP+++++r+aR++grKmS+++f++lL++Laa
Pbr023249.1 189 QASSDGI--KYRSEWDAHDLGLNLVTFDESAMPVPVCSCTGIPRQCYKWGNGGWQSSCCPTHMSMYPLPQMPNKRHARMGGRKMSGNVFTRLLSRLAA 284
7777775..69*************************************************************************************** PP
GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
+G+dls p+DLk++W +HGtn+++ti+
Pbr023249.1 285 DGHDLSIPLDLKEYWSRHGTNRYITIK 311
**************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDDGRQHENG RHKMDYYRGG TAPPWNMMAQ QQAKEPNALV MNKKIMSIIA ERDAAIRERN 60 AALAEKNEAL AARDEALRQR DEALAQRDSA MMERDNAYAA LHSRDNAVNF PLGGGAPRGA 120 KRMHRPSNHS VTLADAHYST KDMHITEAYP VSLISTEDVK SRQTKRAKEN KASRARQSWK 180 KVGEDLNRQA SSDGIKYRSE WDAHDLGLNL VTFDESAMPV PVCSCTGIPR QCYKWGNGGW 240 QSSCCPTHMS MYPLPQMPNK RHARMGGRKM SGNVFTRLLS RLAADGHDLS IPLDLKEYWS 300 RHGTNRYITI K*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |