PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023249.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family BBR-BPC
Protein Properties Length: 312aa    MW: 35079.6 Da    PI: 9.9168
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023249.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3491e-10613111301
    GAGA_bind   1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                  mdd  ++e  r+k  yy+               ++ ++l   +++++ms+iaerda+irern+al+ek++a+a+rd+a+ qrd+ala+r+ a++erdn
  Pbr023249.1   1 MDDGRQHEngRHKMdYYRggtappwnmmaqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALAEKNEALAARDEALRQRDEALAQRDSAMMERDN 96 
                  6776665558999889999999999999987653345666..99****************************************************** PP

    GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskk 176
                  +++al  ++n+   + p g ++ +g+k ++   + +   l+d  + +++++++ea+p++   +e  +++++k   rak++k+++a+ + kk +e+ ++
  Pbr023249.1  97 AYAALHSRDNA--VNFPLGGGAPRGAKRMHRPSN-HSVTLADAHYSTKDMHITEAYPVSLISTEDVKSRQTK---RAKENKASRARqSWKKVGEDLNR 188
                  *******9998..667889999********8777.889*********************9888888887777...55555555555256677778877 PP

    GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                  + ++++   + ++e++  dl+ln v++Des++PvPvCsCtG++rqCYkWGnGGWqS+CC t +S+yPLP+++++r+aR++grKmS+++f++lL++Laa
  Pbr023249.1 189 QASSDGI--KYRSEWDAHDLGLNLVTFDESAMPVPVCSCTGIPRQCYKWGNGGWQSSCCPTHMSMYPLPQMPNKRHARMGGRKMSGNVFTRLLSRLAA 284
                  7777775..69*************************************************************************************** PP

    GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                  +G+dls p+DLk++W +HGtn+++ti+
  Pbr023249.1 285 DGHDLSIPLDLKEYWSRHGTNRYITIK 311
                  **************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.2E-1341311IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-971311IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDDGRQHENG RHKMDYYRGG TAPPWNMMAQ QQAKEPNALV MNKKIMSIIA ERDAAIRERN  60
AALAEKNEAL AARDEALRQR DEALAQRDSA MMERDNAYAA LHSRDNAVNF PLGGGAPRGA  120
KRMHRPSNHS VTLADAHYST KDMHITEAYP VSLISTEDVK SRQTKRAKEN KASRARQSWK  180
KVGEDLNRQA SSDGIKYRSE WDAHDLGLNL VTFDESAMPV PVCSCTGIPR QCYKWGNGGW  240
QSSCCPTHMS MYPLPQMPNK RHARMGGRKM SGNVFTRLLS RLAADGHDLS IPLDLKEYWS  300
RHGTNRYITI K*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379565.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
RefseqXP_018497782.10.0PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
SwissprotQ8S8C61e-131BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A498JUJ20.0A0A498JUJ2_MALDO; Uncharacterized protein
STRINGXP_009379565.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69743348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-124basic pentacysteine 4