PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr022939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 18469.5 Da PI: 10.4979 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.2 | 1.4e-20 | 11 | 63 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50 i n++ r++tf kR +gilKKA E+S+LCd +v++ii+++++ +l++++ Pbr022939.1 11 ITNERARKTTFQKRTKGILKKAGEISTLCDLDVCMIIYGPKQsgrspELHTWP 63 89*************************************98744444577776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.726 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-18 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.29E-18 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 7.72E-22 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.2E-18 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGRGRLNMEL ITNERARKTT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQSGRSPELH 60 TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT 120 WDERIENFSE NELELLLNAL DAKLEAGKRT LLPKRKRPA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr022939.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354489.1 | 1e-115 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A498KCQ2 | 4e-91 | A0A498KCQ2_MALDO; Uncharacterized protein | ||||
STRING | XP_009354489.1 | 1e-114 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 5e-24 | M-type_MADS family protein |