PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 801aa    MW: 85688.5 Da    PI: 7.1537
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022850.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-095696061954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Pbr022850.1 569 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 606
                  664459******************************88 PP

2BELL92.54e-304465001872
         BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +Vd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Pbr022850.1 446 KVDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 500
                  7***************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-74360498IPR006563POX domain
PfamPF075261.2E-41365497IPR006563POX domain
PROSITE profilePS5007112.568547610IPR001356Homeobox domain
CDDcd000861.58E-12550611No hitNo description
SMARTSM003891.2E-9550614IPR001356Homeobox domain
SuperFamilySSF466893.59E-17552617IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-29553616IPR009057Homeodomain-like
PfamPF059204.1E-18567606IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MGIVTLPPLP PPPPKGNLHH RHHSIDSENY SNPPNSMSQD YHQGIFTFSN GFERSAMTTH  60
QEQQQQQQQQ HHLAQQIRRE KLRVQGFETP PPPPLAGLNE EESSGLPAYE TAGMLSEMFN  120
YPPGGGPVGA AELLEHPMSA NYRMIPRPQQ AAAVSAAADW YGRVGGGGLG PLGDSKNQHH  180
HQISTINADS AAAMQLFLMN PSQPRSPSPP PSHTTSSTLH MLLPNPSTTT NSLQGFAAAS  240
GGGGFGQFTW VPESHQGHEA GGNTAGGGGE IGGVVEGQGL SLSLSTSLQH LEAAKAEEFR  300
MGSDSASGLL YYNNQGDHQH QGSNPQYKNL GSHHHQALHS LQQGGVVGGH HVSFGSSSSF  360
GVVNVLRNSK YVKAAQELLE EFCSVGRGQL KKNKFGGSTS GRQNTTTNPS SNQASGGGGG  420
GGTSSSSSKD VPPLSAADRI EHQRRKVDRR YNHYCEQMQM VVNAFDLVMG FGAAVPYTAL  480
AQKAMSRHFR CLKDAITAQL KHSCELIGEK DGAGTSGITK GETPRLKLLE QSLRQQRAFH  540
QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG LSRNQVSNWF  600
INARVRLWKP MVEEMYQQEA NEEEEVGQGG VGGATSAAAD QERERNNNAG LAAQTPTPTT  660
TTTTTTTNSP ASKRSDINAS ENDPSLAAIN RHQQQQHHPM MATTTSTAVA PPAYQCFPPA  720
ASDDTGRSYG TTSANANIAA HHDHQNSSNI DSSTTLISFG TTTAAGDVSL TLGLRHAGGG  780
GGNNMPDKTS SFSIRDFGGC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16556613158Homeobox protein Meis1
4xrs_B1e-16556613158Homeobox protein Meis1
5bng_A1e-16556614159Homeobox protein Meis2
5bng_B1e-16556614159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022850.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0537690.0AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379163.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_018507945.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW801e-174BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLQ9M7S00.0Q9M7S0_MALDO; Homeodomain protein
STRINGXP_009379163.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-131BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]