PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr022850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TALE | ||||||||
Protein Properties | Length: 801aa MW: 85688.5 Da PI: 7.1537 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.9e-09 | 569 | 606 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Pbr022850.1 569 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 606 664459******************************88 PP | |||||||
2 | BELL | 92.5 | 4e-30 | 446 | 500 | 18 | 72 |
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v+++F+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Pbr022850.1 446 KVDRRYNHYCEQMQMVVNAFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 500 7***************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-74 | 360 | 498 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-41 | 365 | 497 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 547 | 610 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.58E-12 | 550 | 611 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 550 | 614 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-17 | 552 | 617 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-29 | 553 | 616 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.1E-18 | 567 | 606 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MGIVTLPPLP PPPPKGNLHH RHHSIDSENY SNPPNSMSQD YHQGIFTFSN GFERSAMTTH 60 QEQQQQQQQQ HHLAQQIRRE KLRVQGFETP PPPPLAGLNE EESSGLPAYE TAGMLSEMFN 120 YPPGGGPVGA AELLEHPMSA NYRMIPRPQQ AAAVSAAADW YGRVGGGGLG PLGDSKNQHH 180 HQISTINADS AAAMQLFLMN PSQPRSPSPP PSHTTSSTLH MLLPNPSTTT NSLQGFAAAS 240 GGGGFGQFTW VPESHQGHEA GGNTAGGGGE IGGVVEGQGL SLSLSTSLQH LEAAKAEEFR 300 MGSDSASGLL YYNNQGDHQH QGSNPQYKNL GSHHHQALHS LQQGGVVGGH HVSFGSSSSF 360 GVVNVLRNSK YVKAAQELLE EFCSVGRGQL KKNKFGGSTS GRQNTTTNPS SNQASGGGGG 420 GGTSSSSSKD VPPLSAADRI EHQRRKVDRR YNHYCEQMQM VVNAFDLVMG FGAAVPYTAL 480 AQKAMSRHFR CLKDAITAQL KHSCELIGEK DGAGTSGITK GETPRLKLLE QSLRQQRAFH 540 QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG LSRNQVSNWF 600 INARVRLWKP MVEEMYQQEA NEEEEVGQGG VGGATSAAAD QERERNNNAG LAAQTPTPTT 660 TTTTTTTNSP ASKRSDINAS ENDPSLAAIN RHQQQQHHPM MATTTSTAVA PPAYQCFPPA 720 ASDDTGRSYG TTSANANIAA HHDHQNSSNI DSSTTLISFG TTTAAGDVSL TLGLRHAGGG 780 GGNNMPDKTS SFSIRDFGGC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-16 | 556 | 613 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 556 | 613 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-16 | 556 | 614 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-16 | 556 | 614 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr022850.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF053769 | 0.0 | AF053769.1 Malus x domestica homeodomain protein (Mdh1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009379163.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Refseq | XP_018507945.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 1e-174 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | Q9M7S0 | 0.0 | Q9M7S0_MALDO; Homeodomain protein | ||||
STRING | XP_009379163.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3524 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-131 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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