PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022799.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 481aa    MW: 52521.5 Da    PI: 7.39
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022799.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-114771327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  ++C +++rtG+C yG+rC+++H++
  Pbr022799.2 47 VPNCVYYMRTGFCGYGGRCRYSHPR 71
                 789********************96 PP
2zf-CCCH37.92.9e-1292116327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C+++++tGtCk+G++Ck++H++
  Pbr022799.2  92 EPVCQYYLKTGTCKFGASCKYHHPK 116
                  789********************96 PP
3zf-CCCH33.75.9e-11137161226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++ +C+++++tG+Ck+G +CkF+H+
  Pbr022799.2 137 GENECSYYLKTGQCKFGITCKFHHP 161
                  6789********************8 PP
4zf-CCCH35.32e-11295318427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   +C+++++tG CkyG++C+++H++
  Pbr022799.2 295 LECQYYLKTGDCKYGPSCRYHHPR 318
                  58********************96 PP
5zf-CCCH34.24.4e-11338363126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++Crf++++G+C +G++CkF H+
  Pbr022799.2 338 PGEPPCRFYLKNGQCMFGSTCKFDHP 363
                  5899*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6294472IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-84771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-64773IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-45071IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61989117IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-789116IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-692117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-594116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089135163IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5135162IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8137161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5138163IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605291319IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9295318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6295319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5297319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23337365IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6337364IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6341366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5342362IPR000571Zinc finger, CCCH-type
CDDcd147981.25E-14384452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MELYGRSPAR NGSNQEWSPA AGETGLEEQM WQLGLTSSES YPERLGVPNC VYYMRTGFCG  60
YGGRCRYSHP RDRAAVVATV RATGDYPERV GEPVCQYYLK TGTCKFGASC KYHHPKHGAG  120
SLNRAPLNIY GYPLRPGENE CSYYLKTGQC KFGITCKFHH PHPAGTTSPA SAPQFYPSVQ  180
SPVPLAEQYG GASTSLRVAR PPLLTGSYVQ GTYGPVLIPP GVVPIQGWSP YSAPLSPVPS  240
PGAQPTVGAT SLYGVTQLSS PTHGLASPYT SIPSSVGPSS SNPSEQVFPE RPGELECQYY  300
LKTGDCKYGP SCRYHHPRDR TVPGITCLLS PIGLPLRPGE PPCRFYLKNG QCMFGSTCKF  360
DHPVQTMSVR LTTGVLFNIA RGIIERLGTL AFQEIGLIWG VKDELQKLKE TVAGFQAVVD  420
VEQKQASNNE VEVWLESIED AVYEADDVLD EFNTEAQRFF FYFINGKYAV PIAFLSVFLV  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022799.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378917.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-178C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A498ISN90.0A0A498ISN9_MALDO; Uncharacterized protein
STRINGXP_009378917.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-161C3H family protein