PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr022596.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TALE

Protein Properties

Length: 618aa MW: 69146.8 Da PI: 7.2208

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr022596.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.3e-09	411	448	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Pbr022596.1 411 FEHflHPYPTDSDKLTLAKQTGLSRSQVSNWFINARVR 448 554459******************************88 PP
2	BELL	101.2	7.5e-33	281	349	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e +++ ++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai+eq+ Pbr022596.1 281 ESRRQNSRLISMLDEVYRRYKQYYQQMQAVARSFEYVAGLGNAAPYANLAIKAMARHFKCLKNAITEQL 349 678899*************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.3E-50	216	347	IPR006563	POX domain
Pfam	PF07526	1.1E-37	221	346	IPR006563	POX domain
PROSITE profile	PS50071	12.244	389	452	IPR001356	Homeobox domain
SMART	SM00389	1.0E-10	392	456	IPR001356	Homeobox domain
CDD	cd00086	4.62E-13	392	453	No hit	No description
SuperFamily	SSF46689	9.41E-17	394	459	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-27	395	456	IPR009057	Homeodomain-like
Pfam	PF05920	1.1E-18	409	448	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MAEGFEPYHV PQQSRRDKLR VLAGQTHPGC LQPGSPSPPP PHLHHALLPL SYDPTTTFIS 60 SSSGLLTCAD PAVKEEGSHH HVIDHLMGFA SNSTSSSTFR HNNHHHPYMD PQFPLTPTAA 120 VQEINPFLYP PQNLHPLRDF DHQQPPYDNQ VVVFKPEPLS LSLSSSQPTN HHSQHTQQTQ 180 NNTNNNNLQR FSSPGINYDS LNSGVSVAFV PFGPFTGYAS ILKGSRFLKP AQHLLEEFCD 240 VGSREIYSAK VLTLEDSSFF DPPIESFGDD DSQMAGGDGG ESRRQNSRLI SMLDEVYRRY 300 KQYYQQMQAV ARSFEYVAGL GNAAPYANLA IKAMARHFKC LKNAITEQLH FRSRNATHLR 360 HEKDGIPMLH GRSAYGQRSL HNSEFVEHQP VWRPQRGLPE RAVTVLRAWL FEHFLHPYPT 420 DSDKLTLAKQ TGLSRSQVSN WFINARVRLW KPMVEEIHML ETRQAQKDSQ RVDLSSNRSS 480 DDHLPSSNSL GSENPSTSTH RVQDTASKRT RRELHDHITM EATEQNVSYN NFPSHMHVGH 540 VGMNMAGASS SGVSLTLGLH QNNGNGFSDP FPINAAQRFG LGLDGSSENY PMGSFEAQNR 600 HFGRDVMGGQ FLHDFVG*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MAEGFEPYHV PQQSRRDKLR VLAGQTHPGC LQPGSPSPPP PHLHHALLPL SYDPTTTFIS  60
SSSGLLTCAD PAVKEEGSHH HVIDHLMGFA SNSTSSSTFR HNNHHHPYMD PQFPLTPTAA  120
VQEINPFLYP PQNLHPLRDF DHQQPPYDNQ VVVFKPEPLS LSLSSSQPTN HHSQHTQQTQ  180
NNTNNNNLQR FSSPGINYDS LNSGVSVAFV PFGPFTGYAS ILKGSRFLKP AQHLLEEFCD  240
VGSREIYSAK VLTLEDSSFF DPPIESFGDD DSQMAGGDGG ESRRQNSRLI SMLDEVYRRY  300
KQYYQQMQAV ARSFEYVAGL GNAAPYANLA IKAMARHFKC LKNAITEQLH FRSRNATHLR  360
HEKDGIPMLH GRSAYGQRSL HNSEFVEHQP VWRPQRGLPE RAVTVLRAWL FEHFLHPYPT  420
DSDKLTLAKQ TGLSRSQVSN WFINARVRLW KPMVEEIHML ETRQAQKDSQ RVDLSSNRSS  480
DDHLPSSNSL GSENPSTSTH RVQDTASKRT RRELHDHITM EATEQNVSYN NFPSHMHVGH  540
VGMNMAGASS SGVSLTLGLH QNNGNGFSDP FPINAAQRFG LGLDGSSENY PMGSFEAQNR  600
HFGRDVMGGQ FLHDFVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	398	456	5	63	Homeobox protein Meis2
3k2a_B	1e-15	398	456	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr022596.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378860.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Refseq	XP_009378869.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	1e-111	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	A0A498K436	0.0	A0A498K436_MALDO; Uncharacterized protein
STRING	XP_009378860.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009378869.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2810	33	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	9e-98	TALE family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]