PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022522.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 342aa    MW: 38068.4 Da    PI: 7.6144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022522.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12163210355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L   ++YIk+Lq
  Pbr022522.1 163 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDSIKYIKQLQ 210
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17163226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-18164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-12165214No hitNo description
SMARTSM003532.6E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEISSRGGSS ELGMEDPFFI NQWQYMNSLD ELGMLPLAAV FGENLQHSQF HPIFNLKTPI  60
DNAHTAIDRP TKQLKTDGWT SGKTDHLVSN PQVVSLPPNI FSFVNSHHAN QMPVLKPKEE  120
AAAVCSKSTN TLPSDILLSQ GSFENRNYSS NGISTTTRLS QTQDHIIAER KRREKLSQRF  180
IALSAIVPGL KKMDKASVLG DSIKYIKQLQ DKVKTLEEQT RNKSMESVVF VKKTQLFANG  240
NNPSSDENGS TGPFDTTLPE IEARFCDNNV LIRIHCEKRK GIVEKTIAEV EKLQLKFINS  300
SVMTFGSCAL DVTIIAQMEA EFSLSVKDLV KNLRAAFELF M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13164219863Transcription factor MYC2
5gnj_B1e-13164219863Transcription factor MYC2
5gnj_E1e-13164219863Transcription factor MYC2
5gnj_F1e-13164219863Transcription factor MYC2
5gnj_G1e-13164219863Transcription factor MYC2
5gnj_I1e-13164219863Transcription factor MYC2
5gnj_M1e-13164219863Transcription factor MYC2
5gnj_N1e-13164219863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRE
2169174RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022522.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378561.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_009378562.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0721e-62BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A498JUI50.0A0A498JUI5_MALDO; Uncharacterized protein
STRINGXP_009378561.10.0(Pyrus x bretschneideri)
STRINGXP_009378562.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-65bHLH family protein