PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022463.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 441aa    MW: 49958.9 Da    PI: 5.3385
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022463.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.6e-36151052101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ ++++swse+g+sfvv+d++efak++Lp yFkh+nf+SFvRQLn+YgF+k++ e+         weF++++F +g ++ll++i+
   Pbr022463.1  15 FLTKTYDLVDDPSSNHMVSWSESGSSFVVWDPTEFAKEMLPMYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEEFLRGGRHLLKNIH 102
                   9***************************************************************9998.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Pbr022463.1 103 RRK 105
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-6011104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3812104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-3612104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.9E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEGSQGGSGG APAPFLTKTY DLVDDPSSNH MVSWSESGSS FVVWDPTEFA KEMLPMYFKH  60
NNFSSFVRQL NTYGFRKIDP EQWEFANEEF LRGGRHLLKN IHRRKPIHSH SMQNHEYTVA  120
LRDTEREEYE KKISRLNHDK SLLELELQRH QRENQEFEFQ VQILREQLQN MENRQKQYTA  180
FLAQLVQKPG FASVLVQQSE IHSKKRRLLN SNHFPDDFGM EGLNLNPQKE NLGSISTPII  240
KLDQLEKMES SLNFWEDFVH GIGEAMPEDV NDICPLSQIS PVIVTEIQDT SMNSRPCSPR  300
SHLSSPNSMN AHSFPEVAAG SANILDILAI TSMCPTVDFR SKSSGIDMNS KPDSAPALAK  360
EMVVELEVKN AAPTKANDVF WEQCLTETPG LADAPEVESE RRDGDGKARD ANPAIQKKHW  420
WNTDNVDNFT NQIGRLTPAT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-25610412120Heat shock factor protein 1
5d5u_B2e-25610419129Heat shock factor protein 1
5d5v_B2e-25610419129Heat shock factor protein 1
5d5v_D2e-25610419129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022463.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354249.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLD9ZJ270.0D9ZJ27_MALDO; HSF domain class transcription factor
STRINGXP_009354248.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.14e-79HSF family protein