PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022437.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 348aa    MW: 38814.8 Da    PI: 5.7799
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022437.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.5e-1148104155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e  a+a++ a++k++g
  Pbr022437.1  48 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAGARAYDLAALKYWG 104
                  57*******************99998898888888*****9999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-1448114IPR016177DNA-binding domain
CDDcd000182.05E-1848114No hitNo description
PfamPF008479.6E-748104IPR001471AP2/ERF domain
PROSITE profilePS5103218.55849112IPR001471AP2/ERF domain
SMARTSM003805.5E-2049118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-1249113IPR001471AP2/ERF domain
PRINTSPR003673.9E-65061IPR001471AP2/ERF domain
PROSITE profilePS5103211.324130190IPR001471AP2/ERF domain
SMARTSM003801.6E-4148196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-7150191IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-6154192IPR016177DNA-binding domain
PRINTSPR003673.9E-6172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAKTSQQNQK NTAGSTNRSS STTSTVTTTK VKRTRKSVRR DSPPQRSSIY RGVTRHRWTG  60
RYEAHLWDKN CWNESQNKKG RQGAYDDEEA GARAYDLAAL KYWGRDTTLN FPVSTYEEEL  120
QEMESQSKEE YIGSLRRKSS GFSRGVSKYR GVARVEQTVL ANLATQEEAA TAYDMAAIEY  180
RGLNAVTNFD LSRYIKSLCP NTTNGPNDDQ QNPNGDLYEM QNPDGVLNQM HNPNGKPELE  240
IMPDHTSSSS ASDSSVVLPR TGNGSSASSA LGLLLQSPKF KEMLERSSVK ECSPTLSEPE  300
IRRRIFPDDI QTYFDCQDLN SIAEGDDIIF GELQPFASPV FHCELDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022437.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354224.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN43e-88AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498HHH20.0A0A498HHH2_MALDO; Uncharacterized protein
STRINGXP_009354224.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-82ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]