PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022398.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 439aa    MW: 48175.9 Da    PI: 5.7485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022398.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10240287455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pbr022398.1 240 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 287
                  8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17234305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-10234291No hitNo description
PROSITE profilePS5088815.618236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17236303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7240287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNRALPEMLN CMNAPGTFIA GNCTDMTVLE RQRARMKWQQ SDHHDQQQQQ IQYNFGGGEL  60
SGVFSLPIHA QGLQGFLSGN RVVKPDPSSE NGWAELGFGS CGLVMNNNGT AGFEGMGNAL  120
NNNISRTFSC PPTVATEKTS GDTVLSQKLS LPAGKESFKK RKADKVQINK AAAAAESDST  180
EKRTKSCAEK GDSKITEQTS TKNNDGESSG DTSKDNSKAS EVQKPDYIHV RARRGQATDS  240
HSLAERVRRE KISERMKYLQ DLVPGCNKIT GKAGMLDEII NYVQSLQRQV EFLSMKLAAV  300
NPRLDFNIDD FFAKESHFAS NQQMFPTCAA NFPTMGMSSE MTNSVYLQLN TMQQLVSSSG  360
LDMGLDSTDL ALRRTISAPS SIPEPFLDTS CFTQPQPTAI WDADLQNIFD VEFQQGRSSF  420
QSQPFTGSIE DSNLKMEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022398.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272150.0AB627215.1 Malus x domestica mRNA, microsatellite: MEST043, clone: FLW01_31_C05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378528.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLA0A498IXW60.0A0A498IXW6_MALDO; Uncharacterized protein
STRINGXP_009378528.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-69cryptochrome-interacting basic-helix-loop-helix 1