PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr022371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 312aa MW: 34916.5 Da PI: 10.0651 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 361.1 | 2.2e-110 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 mdd ++e r+k yy+ ++ ++l +++++ms+ia+rda+irern+al+ek++a+a+rd+a+ qrd+ala+r+ al+erdn Pbr022371.1 1 MDDGRQHEngRHKMdYYRggvaspwnmmtqqqaKEpNALV--MNKKIMSIIADRDAAIRERNAALAEKNEALAARDEALRQRDEALAQRDSALMERDN 96 6776665558999889999999999999987653345666..99****************************************************** PP GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskk 176 +++al ++n+ + p g ++ +g+k ++ + l+d + +++ +++ea+pi+ +ea +++++k+ k++k+++ak + kk +e+ ++ Pbr022371.1 97 AYAALHSRDNA--VNFPLGGGAQRGSKRVQRPSI-HSVTLADVHYSTKDVNITEAYPISVISPEAVKSRQTKRA---KENKASRAKqSRKKVGEDLNR 188 *******9998..5678899999*******7776.889***************************999999944...444444444133444667777 PP GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274 + ++++ + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++lL++Laa Pbr022371.1 189 QASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGIPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAA 284 766666..57**************************************************************************************** PP GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301 +G+dls p+DLk++WA+HGtn+++ti+ Pbr022371.1 285 DGHDLSIPLDLKEYWARHGTNRYITIK 311 **************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.0E-140 | 1 | 311 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 6.6E-100 | 1 | 311 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MDDGRQHENG RHKMDYYRGG VASPWNMMTQ QQAKEPNALV MNKKIMSIIA DRDAAIRERN 60 AALAEKNEAL AARDEALRQR DEALAQRDSA LMERDNAYAA LHSRDNAVNF PLGGGAQRGS 120 KRVQRPSIHS VTLADVHYST KDVNITEAYP ISVISPEAVK SRQTKRAKEN KASRAKQSRK 180 KVGEDLNRQA SSDGIKYKSE WDTHDLGLNL VSFDESTMPV PVCSCTGIPR QCYKWGNGGW 240 QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAADGHDLS IPLDLKEYWA 300 RHGTNRYITI K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr022371.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378460.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X2 | ||||
Refseq | XP_009378461.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X3 | ||||
Refseq | XP_009378462.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X3 | ||||
Refseq | XP_009378463.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X3 | ||||
Swissprot | Q8S8C6 | 1e-133 | BPC4_ARATH; Protein BASIC PENTACYSTEINE4 | ||||
TrEMBL | A0A498JUJ2 | 0.0 | A0A498JUJ2_MALDO; Uncharacterized protein | ||||
STRING | XP_009378459.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6974 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 1e-126 | basic pentacysteine 4 |