PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr022361.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | DBB | ||||||||
Protein Properties | Length: 209aa MW: 22958.9 Da PI: 6.2914 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 9.7e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC++C ++ H Pbr022361.1 4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33 7**************************999 PP | |||||||
2 | zf-B_box | 26.6 | 1.2e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce +++ lC +C + H g H Pbr022361.1 52 DVPCCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91 5789**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.1E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.125 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.39E-6 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 4.3E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-9 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.745 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-6 | 52 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.25E-6 | 56 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAN RHVRVGIATP SDVPCCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGNKLGH SEELGLQPLD 120 QKKVQRDQNQ LPDLKTGENQ HNHNVSPTAV LDNNIDGDYK MDNTPIDLNT RPQRIHGQAS 180 TNQEQGVGVL NGVNDESASV VPVRSFRK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr022361.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378437.1 | 1e-154 | PREDICTED: B-box zinc finger protein 18-like isoform X1 | ||||
Refseq | XP_009378438.1 | 1e-154 | PREDICTED: B-box zinc finger protein 18-like isoform X1 | ||||
Swissprot | C0SVM5 | 6e-76 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A498IYJ9 | 1e-138 | A0A498IYJ9_MALDO; Uncharacterized protein | ||||
STRING | XP_009378437.1 | 1e-154 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-78 | DBB family protein |