PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022353.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 768aa    MW: 81055.1 Da    PI: 7.4233
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022353.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-06739759526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   Cr f+++G+Ck G+ C + H+
  Pbr022353.1 739 VCR-FFESGHCKKGAACDYLHP 759
                  588.9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF552778.37E-19193257IPR003169GYF domain
PROSITE profilePS5082916.693204258IPR003169GYF domain
CDDcd000721.21E-15204259No hitNo description
SMARTSM004442.3E-20205260IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.7E-19206258IPR003169GYF domain
PfamPF022135.2E-16206250IPR003169GYF domain
PROSITE profilePS5010315.122734761IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-5736759IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5736760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4738759IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MTRNGYAVIL NFLFTLRECV EKLQLLKTPE ERQRRLEETP EIHADPNMDP SYESEEEEDE  60
GDDKRQDSYT RSTGSAFGRK GRDPISPRRG GSSFNDSWSG TRNYSNPNRE LSRNMSNKGF  120
YNKAENTTGA GEIVNDSWGQ GRDRETLKTN QWEKKQNISS LETGVRSTQS MVPSESSPGG  180
GSGNSVAHFS TGISQSTATI NDAEKIWHYK DPSGKVQGPF SMTQLRKWNS TGYFPANLRV  240
WKNTEKEEDS ILVTDVLAGK FQKDPSPVDS SFLKAQMVQD SHLTPAHSGK PQGGLFQRGT  300
EGQAGGGSWG SQNELNPSSG RGTPSSVEVP KYSSDGWSTT NFPSPTPSRT PLGGARGQAY  360
ESNWSPTPVH PTGSILGGNG VPQPSTVATP ESALRVSLSG NDRSSSLHGI NAAPKSEGGP  420
LLGSTNSLQM QSQVNASMNQ VPDVKNLVSN LQNLVQSVTS RSPGGDTQGW ASGSVPKQEM  480
TGSGPVSGSE TQHWTGAPSQ RIEPISATTM PAQHPAHGYW SNAPSTNNAT PSINTGNAAG  540
NFPSSGFSGV PQSDPWRPQV PANQSYIQPP ALSPQLPWSM GVPDNQSSLP RTGQENQNAG  600
WAPIGEDPNM AWGGQVPGNT NMNWGAPGQG PGWVGPGQGP VPGNAAPNWV QPAAQGPPAN  660
PGWAPSGQGT AVGNTNPGWS GQTQNGGDRF SNQRDRGPHG GDSGYGGGKP WNRQSSFGGG  720
GGGGGGGGGG GLWRTTSKVC RFFESGHCKK GAACDYLHPT SKNFGNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh2_A4e-142022571470Hypothetical protein At5g08430
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022353.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378431.10.0PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X1
TrEMBLA0A498J2110.0A0A498J211_MALDO; Uncharacterized protein
STRINGXP_009378431.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.12e-79nucleic acid binding;zinc ion binding;DNA binding