PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022332.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 337aa    MW: 37692.3 Da    PI: 8.6598
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022332.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51141391128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrF Ptdeel+v+yL++kv+g +++l ++i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+dk +++ +g+
  Pbr022332.1  14 LPPGFRFYPTDEELLVQYLCRKVAGYQFNL-QIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGTDKIITT-EGK 109
                  79****************************.89***************7777799***********************************9999.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +vg+kk Lvfy g+apkg kt+W+mheyrl
  Pbr022332.1 110 KVGIKKALVFYVGKAPKGIKTNWIMHEYRL 139
                  ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-659162IPR003441NAC domain
PROSITE profilePS5100559.74714162IPR003441NAC domain
PfamPF023651.9E-2515139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGVTETDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGYQ FNLQIIAEID LYKFDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKIITTEGKK VGIKKALVFY  120
VGKAPKGIKT NWIMHEYRLI EPSRKNGSSR LDEWVLCRIY KKSTSSAAAA AAQNSVTSVS  180
GKEHSNGSSS PCSSQLDDGL EWLPDIDDRF FTLPRINSLK TLQQQDSKLN FQNTGSGNFD  240
WASLAGLNSA PELGLNNQTH QGQGQMNLNY NDNDMFVPSI PSLCHVESRP ERVGKTAEEE  300
VQSGLRTRRV DNSGFIQQNS QNFCNPVRPG GFGLWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-11011664169NO APICAL MERISTEM PROTEIN
1ut4_B1e-11011664169NO APICAL MERISTEM PROTEIN
1ut7_A1e-11011664169NO APICAL MERISTEM PROTEIN
1ut7_B1e-11011664169NO APICAL MERISTEM PROTEIN
3swm_A1e-10911667172NAC domain-containing protein 19
3swm_B1e-10911667172NAC domain-containing protein 19
3swm_C1e-10911667172NAC domain-containing protein 19
3swm_D1e-10911667172NAC domain-containing protein 19
3swp_A1e-10911667172NAC domain-containing protein 19
3swp_B1e-10911667172NAC domain-containing protein 19
3swp_C1e-10911667172NAC domain-containing protein 19
3swp_D1e-10911667172NAC domain-containing protein 19
4dul_A1e-11011664169NAC domain-containing protein 19
4dul_B1e-11011664169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022332.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981300.0KF198130.1 Malus hupehensis NAC domain protein (NAC168) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378492.10.0PREDICTED: NAC domain-containing protein 72
RefseqXP_009378493.10.0PREDICTED: NAC domain-containing protein 72
SwissprotA0A3Q7HH641e-141JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLD9ZJ940.0D9ZJ94_MALDO; NAC domain class transcription factor
STRINGXP_009378492.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44293360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-125NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]