PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022230.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CO-like
Protein Properties Length: 412aa    MW: 45976 Da    PI: 6.2722
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022230.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-051858438
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 r+C+++     + fC+ ++ +lC  C  ++H        H+
  Pbr022230.1 18 RVCDTCRAAACTVFCRADSAYLCSGCDATIHAAncvasrHE 58
                 79******99*********************6566666676 PP
2zf-B_box29.71.4e-0960105342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++ + C+ ++  lC  C   +H+       H++vp+
  Pbr022230.1  60 VWVCEACERAPAAFLCKADSASLCTACDADIHSAnplarrHQRVPI 105
                  689*****************************66899999**9997 PP
3CCT69.77.6e-24342385144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Pbr022230.1 342 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 385
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-51562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3951562IPR000315B-box-type zinc finger
CDDcd000213.65E-71862No hitNo description
PROSITE profilePS5011911.40558105IPR000315B-box-type zinc finger
PfamPF006431.2E-759105IPR000315B-box-type zinc finger
CDDcd000217.39E-961105No hitNo description
SMARTSM003368.2E-1163105IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648342384IPR010402CCT domain
PfamPF062038.3E-18342384IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLKEDQSNGT AANNNWARVC DTCRAAACTV FCRADSAYLC SGCDATIHAA NCVASRHERV  60
WVCEACERAP AAFLCKADSA SLCTACDADI HSANPLARRH QRVPILPISG CPYGPRAIEH  120
GRMKLVRSAT AEMEDGFMSQ EGDETIDEED EDEAASWLLL NPVKNNNNNN NTTTTTKNNG  180
LFFGVEVDEY LDLVEYNSCA DQNNQFTDHH QQEQQQEQHF GVPHKNYGGD SVVPVHQYGE  240
XXXXXXXXXX XXXEVGKAHQ MQQLQKRSFH QLGLEYESSK AAYSYNGSLS HSVSVSSMDV  300
GVVPNSTMID ISISHPRTPK GTIDLFSGSS IQMPTQLSPM DREARVLRYR EKKKTRKFEK  360
TIRYASRKAY AETRPRIKGR FAKRTEMEVE VDQMFSTTLM AENGYGIVPS F*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378312.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-135COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A482LYW00.0A0A482LYW0_9ROSA; CO
STRINGXP_009378311.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-106CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]