PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022146.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 28182.8 Da    PI: 9.4895
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022146.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.5e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+t k++ey+s
  Pbr022146.1  9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTSKMHEYIS 59
                 569**********************************************86 PP

2K-box85.41.1e-2871163193
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                  yqk+ g++l+ +++es++  l kLk+ +++L+re+R++lG dL+ Ls+ +L++Le+++++sl  iR++K++++++q+e+++kk k+l+e+  +
  Pbr022146.1  71 YQKTMGVDLWRTHYESMKDTLWKLKEINNKLRREIRQRLGHDLNGLSYDDLRSLEDKMQSSLDAIRERKYHVIKTQTETTKKKVKNLEERRGN 163
                  7899999*********************************************************************************98755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.23E-36280No hitNo description
SuperFamilySSF554551.2E-35295IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-221157IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.3E-2082164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.99684177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TSKMHEYISP  60
TTTTKRMYDD YQKTMGVDLW RTHYESMKDT LWKLKEINNK LRREIRQRLG HDLNGLSYDD  120
LRSLEDKMQS SLDAIRERKY HVIKTQTETT KKKVKNLEER RGNMLHGYFD QEAASENPQY  180
CYVDNEEDYE SALALANGAN NLYTFQLHRN SDQLHHPNLH HHRGSSLGSS ITHLHDLRLA  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-14159159MEF2C
5f28_B4e-14159159MEF2C
5f28_C4e-14159159MEF2C
5f28_D4e-14159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0810930.0AB081093.1 Malus x domestica MdTM6 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378222.11e-180PREDICTED: floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J21e-110TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A498HTZ21e-176A0A498HTZ2_MALDO; Uncharacterized protein
STRINGXP_009378222.11e-179(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]