PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022137.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 1422aa    MW: 155840 Da    PI: 5.8498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022137.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.7e-0613981421226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   +++ C+ ++++G+Ck G++C + H+
  Pbr022137.1 1398 GQRVCK-YYESGHCKKGASCDYLHP 1421
                   6799**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.46E-897149IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.6E-997157IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002496.3E-7104150IPR001965Zinc finger, PHD-type
CDDcd155687.00E-19104149No hitNo description
PROSITE patternPS013590105165IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001518.1E-4314399IPR019835SWIB domain
SuperFamilySSF475922.62E-20316395IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.9E-24316401IPR003121SWIB/MDM2 domain
PfamPF022011.4E-13321394IPR003121SWIB/MDM2 domain
PROSITE profilePS5136025.021456589IPR004343Plus-3 domain
SMARTSM007192.5E-44456566IPR004343Plus-3 domain
SuperFamilySSF1590424.58E-30457586IPR004343Plus-3 domain
PfamPF031261.4E-21461564IPR004343Plus-3 domain
SuperFamilySSF552775.36E-16744800IPR003169GYF domain
CDDcd000722.78E-16746803No hitNo description
PROSITE profilePS5082915.09746800IPR003169GYF domain
SMARTSM004441.0E-17747802IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.4E-16748800IPR003169GYF domain
PfamPF022135.1E-9748788IPR003169GYF domain
SuperFamilySSF902294.4E-613961420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.97113961421IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.00114001420IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1422 aa     Download sequence    Send to blast
MELEQAQLAS AFYRPSIQED GGGGGEPPQP EKVFDRSMPA GEEILAAFQC ETIGGGKVAG  60
EAGQMVVVKE EAGKSLGKRR RGRPPSGHPK ATAVRKQQDE EEDVCFICFD GGSLVLCDRR  120
GCPKAYHPSC IKRDEAFFKS KAKWNCGWHI CSSCQKAAHY WCYTCTYSLC KGCTKGADYQ  180
CVRANKGFCG TCMRTIMLIE NMQENKEGAQ VDFDDKSSWE YLFKVYWILL KGKLSLTLDE  240
LIKAKNPSNE AAVMVCKRDS SVELYDGNKT NSGAVNCCAD LEATHSKRSN KKPRTSDKDL  300
SAEKSLGEKG MPLPEDTVWA SKELLEFVAH MRNGDISVLS QFEVQALLLE YIKKNNLRDP  360
CQKCQIICDS RLIRLFGKEC VGHFEMLKLL EFHFPVKESS KADNISSAGI VNTIASQMEI  420
DGNYDHQTMM GNDKKRKTRK RVDERGPLTN PDAFAAIDVH NINLIYLRRN SMENFFEDID  480
KLHEKVVGSI VRIRIPSGDQ KQDIYRLVQV VGTCKVAEPY KVGTRTTHVK LEILNLNKKE  540
VISIDEISNQ EFSQDECKRL RQSIRCGLSK QLTVGEIQEK AMALHAIRVN DCTLKQCVEK  600
LQLLNSPEER QRRLSEIPEV RPDPTMDPSC ESEDSAGAFD KKQDAKVRPR RSGRRGREPF  660
SQPREGDTSS NSRSKGRKNS GRETFGINGR NTTRSQVNLT GLVSFDGNNQ SAVESNTLSE  720
VASENSSLPL SIVTNVNLCV DDFEADIIWH YQDPTGKVQG PFALMQLRKW STAGHFPLDH  780
RIWKINENPG DSVLLADALN GQYKEPLLPH DSPLLSQGFT VALDDRNNGQ DDGRNKSMNP  840
AAVDDKQVEE SWNTKQDGQS LHNSGSSELV RNTAFADVVN SSDEQNGIVL QGQVPLKDNN  900
SSPNQPQESS SQPSLPVMPS ETLLHQEGES RGAEINSDQT NGNADPQQTA QGQIANGQCN  960
ESRSDSDGHS GQSSGQNWRP PPVSSPSNGC HSNSTFVPFA KSPETAEQDQ KEHNFSDMSS  1020
PTPKPSNGDL KNQAAEIRQF VPSNAPVQDA GHSWSTSSSL VGGGAPLPEV GGDWGRYSPT  1080
PAKPSSIEEW ESSLVSASSF KPSEMDQFTE PTEFCTLPDE SVSDLLAEVE AMETLTSLAN  1140
STSIMNCRGE FTEGSKNGSI SSVDGFSPAP DPGKGDALSS TGDLRGLADE PLGVRHGNAL  1200
DLSSTGDLQV SMETDKPVGI CQGNALDLQN RSGVHSSTSP GMEGDRKYSD VSVNQFEAGT  1260
EIRTTAPSDI ASTDNHWNGR SESTGRSWEA VQPVPRNANM GWGGPDQGSV NLGWGGGQGI  1320
THGNTSIHPG HQLPARGMWE SQPRYGEERF FSPRDRGFQN RDLGIGRGRF GWNRQTLYGN  1380
GNGNGNGNGG SFRPPPKGQR VCKYYESGHC KKGASCDYLH P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-131021771587Histone-lysine N-methyltransferase NSD3
4gnd_C1e-131021771587Histone-lysine N-methyltransferase NSD3
4gne_A1e-131021771587Histone-lysine N-methyltransferase NSD3
4gnf_A1e-131021771587Histone-lysine N-methyltransferase NSD3
4gng_A1e-131021771587Histone-lysine N-methyltransferase NSD3
4gng_D1e-131021771587Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022137.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378209.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X1
RefseqXP_009378210.10.0PREDICTED: zinc finger CCCH domain-containing protein 19-like isoform X1
TrEMBLA0A498HWN90.0A0A498HWN9_MALDO; Uncharacterized protein
STRINGXP_009378208.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding