PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr022051.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 1664aa MW: 181520 Da PI: 5.8182

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr022051.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	6e-09	792	834	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++W +eE el+++ + +G++ +++Ia+ + ++t +c+++++k Pbr022051.1 792 NPWMPEEKELFIQKLTIYGKD-FRKIASFLD-HKTTADCVEFYYK 834 68***************99.*****.*********98 PP
2	Myb_DNA-binding	28.3	4.1e-09	1011	1051	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ R+ qck ++ Pbr022051.1 1011 DWTDEEKSSFIQAVSSYGKD-FAMISRCIR-SRSQHQCKVFFS 1051 6***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-14	777	838	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-5	787	837	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.529	789	840	IPR017884	SANT domain
SMART	SM00717	1.5E-8	790	838	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-6	792	834	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.026	1007	1058	IPR017884	SANT domain
SMART	SM00717	1.4E-6	1008	1056	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.02E-10	1009	1058	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-6	1011	1051	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-5	1011	1052	IPR009057	Homeodomain-like
CDD	cd00167	1.38E-5	1012	1050	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1664 aa Download sequence Send to blast
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSPHHAPR DFNRWPSGDF RRPPGHGKQG 60 AWHVFSDDSG HGYGSSRSGD KMLEDESFRP SFSRGDGRYG RNSRDNRGPP YSQRETKGHS 120 WDARSGSPNM PGRPNHNEQK SQDDMLTYSS HQPSDFGSTW DRIQLKDQLD RMGGSTGLGA 180 GQKCERENSL GSIDWKPLKW TRSGSLSSRV SGFSHLSSSK SMGPVDSNEA MVNSQPKNAT 240 PVQSPSGEAT TGVTSAAPSE ETTSRKKPRL GWGEGLAKYE KKKVEVPDAS MNNDGAVCSV 300 GNTEPAHSLS SSLPDKSPRV TIFLDCASPA TPSSVVCSSS PGVEEKSFCK AVNIDNDIRN 360 VCGSPGHMSQ SHHEGFSFQL EKLDSNSIVN LDSSLLELLQ SDDPSSVDSS SRRPTALNKL 420 LIWKGEISKV LEVTESEIDS LENELKALNS DSGGSCPHPA TSSSLPVEDK DKSCKEHVTN 480 LITLPIALQI HSSGDTDVQK MCVDNRDQVE FCGIVNDEDI DSPGTATSKF VESFPLVSSS 540 DMMNQTGCSE DWDPIQTTIG EETCSVPSRC TEKTDPSTCG NSSMLLDKEI VAPACGVVDK 600 LSDSIFSANK EFASRASDIF SKLLPKEQYE VDPSGVSVPS SWKNDPLNKE KFAKRKQHLR 660 FMERVVTLKF KAFQHLWKED MHLLSMRKCR SKSHKNIELS LRATNNGHQK HRSSIRSRFS 720 TPAGSLTLFP ATETINFTNK LLSDSQVKLY RNSLKMPALI LDKKEKMATR FVSSNGLVED 780 PCAVENERAL MNPWMPEEKE LFIQKLTIYG KDFRKIASFL DHKTTADCVE FYYKNHKSDC 840 FKKAKKKPDM AKQEKSSANT YLISNGKKWN REMHAASLDI LGAASAIAAH AESSTRNRQT 900 YSRRLILGGY KNTNTSYGDD TMVERPCSFD TIGNERETAA ADVLAGICGS ISSEAVSSCI 960 TSSIDPVESY REWKCQKVDS VVRRPLTPDV MHNVDDETCS DESCGEMDPS DWTDEEKSSF 1020 IQAVSSYGKD FAMISRCIRS RSQHQCKVFF SKARKCLGLD LVHPRPGNGT SVGDDANGGG 1080 SDAEDACDLE TGSGISSDKS GCNMNEDLPS SVTNMNDDEA EPAESMKLQT SPLRPEENNA 1140 MAEVDHGDGK PLKFLAFGDD TDIMDSGAMG GNVTENGILV AESLTVGEGI NSDTPNPECM 1200 VGEKLVGQNS FDRFGKELEG GDERTNRGKS GCHIPVSVHD LCGNASDQAT DGSCSGLNPE 1260 YLHEVSVELN SVQKPSVIPL PLENPLATAD TAGQDSAAIE CEKSLDQDRL SSTPDLQEGR 1320 DHQCSKSVGE DDSRKHLSGF PVYTNVEPSQ VIRGYPLQIA TKKETNGDIS CGNLSEAKPD 1380 RNINGHYMTQ NGFLQFRNCK PSCSEVDFPP VPLKILSNPS KSTSSIHENE EGAHNHQLSN 1440 KASNLKFTGH HSADGSSPLL KFDCGGYLGL ENVPRRSYGG FWEGNKVRTG FSSFPDSAIL 1500 LAKYPAAFSN FPTSSSQMEQ QPLQAVVKTS DGSLNGVSIF PGMEINGSNG VVDYPVFSRG 1560 RDGGAKVQPF TVDVKQQRQD MFDIPRRNGL DAITSLQQQG RAIVGMNVMG RGGILVGGPC 1620 TGVSDPVAAI RMHYAKTEQY GGQAGSIVGE EESWRGGKGD IGR*

Sequence ? help Back to Top

Protein Sequence Length: 1664 aa Download sequence Send to blast

MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSPHHAPR DFNRWPSGDF RRPPGHGKQG  60
AWHVFSDDSG HGYGSSRSGD KMLEDESFRP SFSRGDGRYG RNSRDNRGPP YSQRETKGHS  120
WDARSGSPNM PGRPNHNEQK SQDDMLTYSS HQPSDFGSTW DRIQLKDQLD RMGGSTGLGA  180
GQKCERENSL GSIDWKPLKW TRSGSLSSRV SGFSHLSSSK SMGPVDSNEA MVNSQPKNAT  240
PVQSPSGEAT TGVTSAAPSE ETTSRKKPRL GWGEGLAKYE KKKVEVPDAS MNNDGAVCSV  300
GNTEPAHSLS SSLPDKSPRV TIFLDCASPA TPSSVVCSSS PGVEEKSFCK AVNIDNDIRN  360
VCGSPGHMSQ SHHEGFSFQL EKLDSNSIVN LDSSLLELLQ SDDPSSVDSS SRRPTALNKL  420
LIWKGEISKV LEVTESEIDS LENELKALNS DSGGSCPHPA TSSSLPVEDK DKSCKEHVTN  480
LITLPIALQI HSSGDTDVQK MCVDNRDQVE FCGIVNDEDI DSPGTATSKF VESFPLVSSS  540
DMMNQTGCSE DWDPIQTTIG EETCSVPSRC TEKTDPSTCG NSSMLLDKEI VAPACGVVDK  600
LSDSIFSANK EFASRASDIF SKLLPKEQYE VDPSGVSVPS SWKNDPLNKE KFAKRKQHLR  660
FMERVVTLKF KAFQHLWKED MHLLSMRKCR SKSHKNIELS LRATNNGHQK HRSSIRSRFS  720
TPAGSLTLFP ATETINFTNK LLSDSQVKLY RNSLKMPALI LDKKEKMATR FVSSNGLVED  780
PCAVENERAL MNPWMPEEKE LFIQKLTIYG KDFRKIASFL DHKTTADCVE FYYKNHKSDC  840
FKKAKKKPDM AKQEKSSANT YLISNGKKWN REMHAASLDI LGAASAIAAH AESSTRNRQT  900
YSRRLILGGY KNTNTSYGDD TMVERPCSFD TIGNERETAA ADVLAGICGS ISSEAVSSCI  960
TSSIDPVESY REWKCQKVDS VVRRPLTPDV MHNVDDETCS DESCGEMDPS DWTDEEKSSF  1020
IQAVSSYGKD FAMISRCIRS RSQHQCKVFF SKARKCLGLD LVHPRPGNGT SVGDDANGGG  1080
SDAEDACDLE TGSGISSDKS GCNMNEDLPS SVTNMNDDEA EPAESMKLQT SPLRPEENNA  1140
MAEVDHGDGK PLKFLAFGDD TDIMDSGAMG GNVTENGILV AESLTVGEGI NSDTPNPECM  1200
VGEKLVGQNS FDRFGKELEG GDERTNRGKS GCHIPVSVHD LCGNASDQAT DGSCSGLNPE  1260
YLHEVSVELN SVQKPSVIPL PLENPLATAD TAGQDSAAIE CEKSLDQDRL SSTPDLQEGR  1320
DHQCSKSVGE DDSRKHLSGF PVYTNVEPSQ VIRGYPLQIA TKKETNGDIS CGNLSEAKPD  1380
RNINGHYMTQ NGFLQFRNCK PSCSEVDFPP VPLKILSNPS KSTSSIHENE EGAHNHQLSN  1440
KASNLKFTGH HSADGSSPLL KFDCGGYLGL ENVPRRSYGG FWEGNKVRTG FSSFPDSAIL  1500
LAKYPAAFSN FPTSSSQMEQ QPLQAVVKTS DGSLNGVSIF PGMEINGSNG VVDYPVFSRG  1560
RDGGAKVQPF TVDVKQQRQD MFDIPRRNGL DAITSLQQQG RAIVGMNVMG RGGILVGGPC  1620
TGVSDPVAAI RMHYAKTEQY GGQAGSIVGE EESWRGGKGD IGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	1e-14	756	842	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	1e-14	756	842	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr022051.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378096.1	0.0	PREDICTED: uncharacterized protein LOC103966637 isoform X1
TrEMBL	A0A498KTS5	0.0	A0A498KTS5_MALDO; Uncharacterized protein
STRING	XP_009378096.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-153	MYB family protein